Information for 8-ATCTAATTACAGG (Motif 6)

T G C A A C G T A T G C A C G T C G T A C G T A A C G T A C G T G T C A A G T C C G T A A T C G A T C G
Reverse Opposite:
A T G C A T G C A C G T A C T G A C G T G T C A C G T A A C G T A C G T T G C A A T C G C G T A A C G T
p-value:1e-9
log p-value:-2.155e+01
Information Content per bp:1.909
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.2 +/- 16.8bp
Average Position of motif in Background37.7 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ALX3/MA0634.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:ATCTAATTACAGG
-TCTAATTAAA--
 T G C A A C G T A T G C A C G T C G T A C G T A A C G T A C G T G T C A A G T C C G T A A T C G A T C G
A C G T G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A A C G T A C G T

VAX2/MA0723.1/Jaspar

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:ATCTAATTACAGG
--CTAATTAC---
 T G C A A C G T A T G C A C G T C G T A C G T A A C G T A C G T G T C A A G T C C G T A A T C G A T C G
A C G T A C G T A G T C G A C T G T C A G C T A C G A T C A G T C T G A A G T C A C G T A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:forward strand
Alignment:ATCTAATTACAGG
--CTAATTAG---
 T G C A A C G T A T G C A C G T C G T A C G T A A C G T A C G T G T C A A G T C C G T A A T C G A T C G
A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T A C G T

VAX1/MA0722.1/Jaspar

Match Rank:4
Score:0.71
Offset:2
Orientation:forward strand
Alignment:ATCTAATTACAGG
--CTAATTAC---
 T G C A A C G T A T G C A C G T C G T A C G T A A C G T A C G T G T C A A G T C C G T A A T C G A T C G
A C G T A C G T A G T C G A C T G T C A G T C A C G A T C A G T C T G A G A T C A C G T A C G T A C G T

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:ATCTAATTACAGG
ADBTAATTAR---
 T G C A A C G T A T G C A C G T C G T A C G T A A C G T A C G T G T C A A G T C C G T A A T C G A T C G
C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G A C G T A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:6
Score:0.71
Offset:2
Orientation:forward strand
Alignment:ATCTAATTACAGG
--CTAATTAT---
 T G C A A C G T A T G C A C G T C G T A C G T A A C G T A C G T G T C A A G T C C G T A A T C G A T C G
A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ATCTAATTACAGG
-NCTAATTA----
 T G C A A C G T A T G C A C G T C G T A C G T A A C G T A C G T G T C A A G T C C G T A A T C G A T C G
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T A C G T

PDX1/MA0132.2/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:ATCTAATTACAGG
--CTAATTAN---
 T G C A A C G T A T G C A C G T C G T A C G T A A C G T A C G T G T C A A G T C C G T A A T C G A T C G
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T G A A T G C A C G T A C G T A C G T

PH0045.1_Hoxa1/Jaspar

Match Rank:9
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ATCTAATTACAGG
CTGAGCTAATTACCGT
 A C G T A C G T A C G T T G C A A C G T A T G C A C G T C G T A C G T A A C G T A C G T G T C A A G T C C G T A A T C G A T C G
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

LBX1/MA0618.1/Jaspar

Match Rank:10
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:ATCTAATTACAGG
--CTAATTAA---
 T G C A A C G T A T G C A C G T C G T A C G T A A C G T A C G T G T C A A G T C C G T A A T C G A T C G
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T A C G T