Information for 6-AWGMACTTTCMRA (Motif 3)

C G T A C G A T A C T G G T C A C G T A T A G C A C G T A C G T A C G T G T A C G T C A C T G A C G T A
Reverse Opposite:
A C G T A G C T A C G T A C T G C G T A C G T A C G T A A C T G A C G T A C G T A G T C C G T A A C G T
p-value:1e-11
log p-value:-2.669e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.5 +/- 25.3bp
Average Position of motif in Background36.7 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AWGMACTTTCMRA
---CGGTTTCAAA
 C G T A C G A T A C T G G T C A C G T A T A G C A C G T A C G T A C G T G T A C G T C A C T G A C G T A
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AWGMACTTTCMRA
AAGCACTTAA---
 C G T A C G A T A C T G G T C A C G T A T A G C A C G T A C G T A C G T G T A C G T C A C T G A C G T A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AWGMACTTTCMRA-
----ATTTTCCATT
 C G T A C G A T A C T G G T C A C G T A T A G C A C G T A C G T A C G T G T A C G T C A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AWGMACTTTCMRA
NNATTGGACTTTNGNN
 A C G T A C G T A C G T C G T A C G A T A C T G G T C A C G T A T A G C A C G T A C G T A C G T G T A C G T C A C T G A C G T A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AWGMACTTTCMRA
NNNGTGACCTTTGNNN
 A C G T A C G T A C G T C G T A C G A T A C T G G T C A C G T A T A G C A C G T A C G T A C G T G T A C G T C A C T G A C G T A
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

NFATC3/MA0625.1/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AWGMACTTTCMRA-
----ATTTTCCATT
 C G T A C G A T A C T G G T C A C G T A T A G C A C G T A C G T A C G T G T A C G T C A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AWGMACTTTCMRA
-TGACCTTTNCNT
 C G T A C G A T A C T G G T C A C G T A T A G C A C G T A C G T A C G T G T A C G T C A C T G A C G T A
A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

PH0112.1_Nkx2-3/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AWGMACTTTCMRA
CNTTAAGTACTTAANG-
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G G T C A C G T A T A G C A C G T A C G T A C G T G T A C G T C A C T G A C G T A
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AWGMACTTTCMRA
NATTTAAGTACTTANNA-
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C T G G T C A C G T A T A G C A C G T A C G T A C G T G T A C G T C A C T G A C G T A
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AWGMACTTTCMRA
NNNNTGACCTTTNNNN
 A C G T A C G T A C G T C G T A C G A T A C T G G T C A C G T A T A G C A C G T A C G T A C G T G T A C G T C A C T G A C G T A
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A