Information for 3-TTTTTGGCAG (Motif 9)

A C G T A C G T A C G T A C G T C G A T A C T G A T C G G A T C C G T A C T A G
Reverse Opposite:
A G T C A C G T C T A G A T G C G T A C C G T A T G C A C G T A C G T A C G T A
p-value:1e-8
log p-value:-1.875e+01
Information Content per bp:1.854
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif5.19%
Number of Background Sequences with motif233.0
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets38.0 +/- 25.7bp
Average Position of motif in Background49.6 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTTTTGGCAG-
-NNTTGGCANN
 A C G T A C G T A C G T A C G T C G A T A C T G A T C G G A T C C G T A C T A G A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TTTTTGGCAG
--CTTGGCAA
 A C G T A C G T A C G T A C G T C G A T A C T G A T C G G A T C C G T A C T A G
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TTTTTGGCAG
---TTGGCA-
 A C G T A C G T A C G T A C G T C G A T A C T G A T C G G A T C C G T A C T A G
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TTTTTGGCAG-
--NTTGGCANN
 A C G T A C G T A C G T A C G T C G A T A C T G A T C G G A T C C G T A C T A G A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTTTTGGCAG
TTTTATGGCTN
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G A T C G G A T C C G T A C T A G
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTGGCAG---
ANATTTTTGCAANTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G A T C G G A T C C G T A C T A G A C G T A C G T A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTGGCAG
NTTTTATGAC--
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G A T C G G A T C C G T A C T A G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTGGCAG--
TTTTTTTTCNNGTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G A T C G G A T C C G T A C T A G A C G T A C G T
G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

MEF2C/MA0497.1/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTTGGCAG
TTCTATTTTTAGNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G A T C G G A T C C G T A C T A G
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTTTTGGCAG
-TNNGGGCAG
 A C G T A C G T A C G T A C G T C G A T A C T G A T C G G A T C C G T A C T A G
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G