Information for 2-GCTTGTTCTG (Motif 9)

A C T G A G T C G A C T C G A T T C A G A G C T G A C T T A G C G C A T T A C G
Reverse Opposite:
A T G C C G T A A T C G C T G A T C G A A G T C G C T A C T G A T C A G T G A C
p-value:1e-9
log p-value:-2.215e+01
Information Content per bp:1.579
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif12.28%
Number of Background Sequences with motif2656.7
Percentage of Background Sequences with motif5.37%
Average Position of motif in Targets50.9 +/- 29.4bp
Average Position of motif in Background49.6 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCTTGTTCTG----
GTNTTGTTGTGANNT
 A C G T A C T G A G T C G A C T C G A T T C A G A G C T G A C T T A G C G C A T T A C G A C G T A C G T A C G T A C G T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

PB0062.1_Sox12_1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCTTGTTCTG---
TAATTGTTCTAAAC
 A C G T A C T G A G T C G A C T C G A T T C A G A G C T G A C T T A G C G C A T T A C G A C G T A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCTTGTTCTG
-ATTGTT---
 A C T G A G T C G A C T C G A T T C A G A G C T G A C T T A G C G C A T T A C G
A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGTTCTG----
NNTTTTGTTTTGATNT
 A C G T A C G T A C T G A G T C G A C T C G A T T C A G A G C T G A C T T A G C G C A T T A C G A C G T A C G T A C G T A C G T
C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GCTTGTTCTG--
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G A C T C G A T T C A G A G C T G A C T T A G C G C A T T A C G A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GCTTGTTCTG--
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G A C T C G A T T C A G A G C T G A C T T A G C G C A T T A C G A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGTTCTG-----
NNCTTTGTTTTGNTNNN
 A C G T A C G T A C T G A G T C G A C T C G A T T C A G A G C T G A C T T A G C G C A T T A C G A C G T A C G T A C G T A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GCTTGTTCTG--
NNTTTATTGTTCTNNN
 A C G T A C G T A C G T A C G T A C T G A G T C G A C T C G A T T C A G A G C T G A C T T A G C G C A T T A C G A C G T A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGTTCTG---
NCNTTTGTTATTTNN
 A C G T A C G T A C T G A G T C G A C T C G A T T C A G A G C T G A C T T A G C G C A T T A C G A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PB0063.1_Sox13_1/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GCTTGTTCTG--
AANTTATTGTTCTNNA
 A C G T A C G T A C G T A C G T A C T G A G T C G A C T C G A T T C A G A G C T G A C T T A G C G C A T T A C G A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A