Information for 3-TMTTACCAATMTT (Motif 4)

A C G T G T A C C G A T A C G T C G T A A G T C A G T C C G T A C G T A A C G T G T C A A C G T A C G T
Reverse Opposite:
C G T A C G T A C A G T C G T A C G A T C G A T A C T G A C T G A C G T C G T A C G T A A C T G C G T A
p-value:1e-10
log p-value:-2.529e+01
Information Content per bp:1.912
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.7 +/- 27.0bp
Average Position of motif in Background42.2 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TMTTACCAATMTT--
-NNTNNCAATATTAG
 A C G T G T A C C G A T A C G T C G T A A G T C A G T C C G T A C G T A A C G T G T C A A C G T A C G T A C G T A C G T
A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TMTTACCAATMTT--
-NNTNNCAATATTAG
 A C G T G T A C C G A T A C G T C G T A A G T C A G T C C G T A C G T A A C G T G T C A A C G T A C G T A C G T A C G T
A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0022.1_Gata5_1/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TMTTACCAATMTT
NTNTTCTTATCAGTNTN
 A C G T A C G T A C G T A C G T A C G T G T A C C G A T A C G T C G T A A G T C A G T C C G T A C G T A A C G T G T C A A C G T A C G T
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A

PB0023.1_Gata6_1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TMTTACCAATMTT
NNANTCTTATCTNNNNN
 A C G T A C G T A C G T A C G T A C G T G T A C C G A T A C G T C G T A A G T C A G T C C G T A C G T A A C G T G T C A A C G T A C G T
A G T C C G T A G C T A G A C T A C G T A T G C C G A T C G A T C T G A C G A T G T A C C G A T G T A C A C G T G C T A C A G T G C T A

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TMTTACCAATMTT
CCGTATTATAAACAA-
 A C G T A C G T A C G T A C G T G T A C C G A T A C G T C G T A A G T C A G T C C G T A C G T A A C G T G T C A A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A A C G T

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TMTTACCAATMTT
---NAACAAT---
 A C G T G T A C C G A T A C G T C G T A A G T C A G T C C G T A C G T A A C G T G T C A A C G T A C G T
A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T

PB0021.1_Gata3_1/Jaspar

Match Rank:7
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------TMTTACCAATMTT--
NNTNANTTCTTATCTCTANANN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G A T A C G T C G T A A G T C A G T C C G T A C G T A A C G T G T C A A C G T A C G T A C G T A C G T
G T A C A G C T C A G T G C A T T G C A C G A T G A C T A C G T A T G C C G A T C G A T C G T A A C G T A G T C C G A T G T A C G A C T G C T A G C T A C G T A G T C A T C G A

PB0136.1_IRC900814_2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TMTTACCAATMTT---
TTTTACGACTTTCCAT
 A C G T G T A C C G A T A C G T C G T A A G T C A G T C C G T A C G T A A C G T G T C A A C G T A C G T A C G T A C G T A C G T
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TMTTACCAATMTT
NNACTTACCTN----
 A C G T A C G T A C G T G T A C C G A T A C G T C G T A A G T C A G T C C G T A C G T A A C G T G T C A A C G T A C G T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TMTTACCAATMTT
ATTTTCCATT---
 A C G T G T A C C G A T A C G T C G T A A G T C A G T C C G T A C G T A A C G T G T C A A C G T A C G T
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T A C G T A C G T