Information for 1-TCCCABATTGTGCCAA (Motif 3)

A C G T A G T C G T A C A G T C C G T A A T C G C G T A A C G T A C G T C T A G A G C T A C T G A G T C G T A C C T G A C G T A
Reverse Opposite:
A C G T A G C T A C T G A C T G T G A C C T G A G A T C C G T A C G T A C G A T T A G C A C G T C T A G A C T G C T A G G T C A
p-value:1e-11
log p-value:-2.728e+01
Information Content per bp:1.779
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.6 +/- 22.2bp
Average Position of motif in Background83.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.65
Offset:8
Orientation:forward strand
Alignment:TCCCABATTGTGCCAA--
--------GGTGCCAAGT
 A C G T A G T C G T A C A G T C C G T A A T C G C G T A A C G T A C G T C T A G A G C T A C T G A G T C G T A C C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:2
Score:0.61
Offset:6
Orientation:forward strand
Alignment:TCCCABATTGTGCCAA--
------AATATGCAAATT
 A C G T A G T C G T A C A G T C C G T A A T C G C G T A A C G T A C G T C T A G A G C T A C T G A G T C G T A C C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

PB0183.1_Sry_2/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCCCABATTGTGCCAA--
-CNNNTATTGTTCNNNNN
 A C G T A G T C G T A C A G T C C G T A A T C G C G T A A C G T A C G T C T A G A G C T A C T G A G T C G T A C C T G A C G T A A C G T A C G T
A C G T A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:TCCCABATTGTGCCAA-
-------TTATGCAAAT
 A C G T A G T C G T A C A G T C C G T A A T C G C G T A A C G T A C G T C T A G A G C T A C T G A G T C G T A C C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU3F3/MA0788.1/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TCCCABATTGTGCCAA---
------ATTATGCTAATTT
 A C G T A G T C G T A C A G T C C G T A A T C G C G T A A C G T A C G T C T A G A G C T A C T G A G T C G T A C C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

PB0173.1_Sox21_2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TCCCABATTGTGCCAA--
-AATCAATTGTTCCGCTA
 A C G T A G T C G T A C A G T C C G T A A T C G C G T A A C G T A C G T C T A G A G C T A C T G A G T C G T A C C T G A C G T A A C G T A C G T
A C G T T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

CEBPA/MA0102.3/Jaspar

Match Rank:7
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:TCCCABATTGTGCCAA
-----NATTGTGCAAT
 A C G T A G T C G T A C A G T C C G T A A T C G C G T A A C G T A C G T C T A G A G C T A C T G A G T C G T A C C T G A C G T A
A C G T A C G T A C G T A C G T A C G T C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.59
Offset:10
Orientation:reverse strand
Alignment:TCCCABATTGTGCCAA
----------TGCCAA
 A C G T A G T C G T A C A G T C C G T A A T C G C G T A A C G T A C G T C T A G A G C T A C T G A G T C G T A C C T G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.59
Offset:8
Orientation:forward strand
Alignment:TCCCABATTGTGCCAA-
--------CGTGCCAAG
 A C G T A G T C G T A C A G T C C G T A A T C G C G T A A C G T A C G T C T A G A G C T A C T G A G T C G T A C C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.59
Offset:9
Orientation:forward strand
Alignment:TCCCABATTGTGCCAA--
---------ATGCCAACC
 A C G T A G T C G T A C A G T C C G T A A T C G C G T A A C G T A C G T C T A G A G C T A C T G A G T C G T A C C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C