Information for 2-GAGAGGTGGGTTA (Motif 2)

A C T G C G T A A C T G C G T A A C T G A C T G A C G T A T C G A C T G C T A G C G A T A C G T C T G A
Reverse Opposite:
A G C T C G T A C G T A A G T C G T A C T A G C C G T A A G T C A G T C A C G T A G T C A C G T A G T C
p-value:1e-14
log p-value:-3.358e+01
Information Content per bp:1.868
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.8 +/- 22.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGGTGGGTTA
CTTGAGTGGCT-----
 A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A T C G A C T G C T A G C G A T A C G T C T G A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGGTGGGTTA
TTGAGTGSTT-----
 A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A T C G A C T G C T A G C G A T A C G T C T G A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T

TBX15/MA0803.1/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAGAGGTGGGTTA
---AGGTGTGA--
 A C T G C G T A A C T G C G T A A C T G A C T G A C G T A T C G A C T G C T A G C G A T A C G T C T G A
A C G T A C G T A C G T C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GAGAGGTGGGTTA
GGATTGACAGGTCNTT--
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A T C G A C T G C T A G C G A T A C G T C T G A
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGAGGTGGGTTA
AACAGGTGT----
 A C T G C G T A A C T G C G T A A C T G A C T G A C G T A T C G A C T G C T A G C G A T A C G T C T G A
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAGAGGTGGGTTA
--CAGGTAAGTAT
 A C T G C G T A A C T G C G T A A C T G A C T G A C G T A T C G A C T G C T A G C G A T A C G T C T G A
A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

PH0104.1_Meis2/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GAGAGGTGGGTTA
NTATTGACAGGTNNTN--
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A T C G A C T G C T A G C G A T A C G T C T G A
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAGAGGTGGGTTA
---AGGTGTGA--
 A C T G C G T A A C T G C G T A A C T G A C T G A C G T A T C G A C T G C T A G C G A T A C G T C T G A
A C G T A C G T A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GAGAGGTGGGTTA
BTBRAGTGSN------
 A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A T C G A C T G C T A G C G A T A C G T C T G A
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GAGAGGTGGGTTA
---AGGTGTGA--
 A C T G C G T A A C T G C G T A A C T G A C T G A C G T A T C G A C T G C T A G C G A T A C G T C T G A
A C G T A C G T A C G T C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T A C G T