Information for 3-BACATACGAG (Motif 13)

A T G C T G C A A G T C G C T A A C G T C G T A G A T C C A T G C G T A A C T G
Reverse Opposite:
A G T C C G A T G T A C C T A G A C G T C G T A C G A T C T A G A C G T T A C G
p-value:1e-8
log p-value:-1.888e+01
Information Content per bp:1.722
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif66.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets49.6 +/- 22.7bp
Average Position of motif in Background46.5 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--BACATACGAG----
ANATTTTACGAGNNNN
 A C G T A C G T A T G C T G C A A G T C G C T A A C G T C G T A G A T C C A T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:BACATACGAG-
NTTTTACGAGN
 A T G C T G C A A G T C G C T A A C G T C G T A G A T C C A T G C G T A A C T G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--BACATACGAG----
NAATTTTACGAGNTNN
 A C G T A C G T A T G C T G C A A G T C G C T A A C G T C G T A G A T C C A T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PB0106.1_Arid5a_2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---BACATACGAG----
CATACAATACGAAATAA
 A C G T A C G T A C G T A T G C T G C A A G T C G C T A A C G T C G T A G A T C C A T G C G T A A C T G A C G T A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-BACATACGAG-
GNCTATAAAAGG
 A C G T A T G C T G C A A G T C G C T A A C G T C G T A G A T C C A T G C G T A A C T G A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

Twist2/MA0633.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:BACATACGAG
NACATATGGN
 A T G C T G C A A G T C G C T A A C G T C G T A G A T C C A T G C G T A A C T G
G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

Bhlha15/MA0607.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:BACATACGAG
-ACATATGG-
 A T G C T G C A A G T C G C T A A C G T C G T A G A T C C A T G C G T A A C T G
A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T

GATA3/MA0037.2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:BACATACGAG
-AGATAAGA-
 A T G C T G C A A G T C G C T A A C G T C G T A G A T C C A T G C G T A A C T G
A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:BACATACGAG-
-GGGTACGTGC
 A T G C T G C A A G T C G C T A A C G T C G T A G A T C C A T G C G T A A C T G A C G T
A C G T C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C

PB0021.1_Gata3_1/Jaspar

Match Rank:10
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------BACATACGAG------
TTTTTAGAGATAAGAAATAAAG
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C T G C A A G T C G C T A A C G T C G T A G A T C C A T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G