Information for 7-AGAGGGTGAAGCACTA (Motif 9)

T C G A C T A G C G T A C T A G A T C G C T A G C G A T A T C G C T G A G T C A A C T G A G T C T C G A G A T C A G C T C G T A
Reverse Opposite:
C G A T C T G A C A T G A G C T C T A G A G T C A C G T A G C T A T G C C G T A A G T C A T G C G A T C A C G T A G T C A C G T
p-value:1e-11
log p-value:-2.651e+01
Information Content per bp:1.735
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.2 +/- 26.0bp
Average Position of motif in Background85.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ATF4/MA0833.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AGAGGGTGAAGCACTA
---GGATGATGCAATA
 T C G A C T A G C G T A C T A G A T C G C T A G C G A T A T C G C T G A G T C A A C T G A G T C T C G A G A T C A G C T C G T A
A C G T A C G T A C G T C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:AGAGGGTGAAGCACTA
------NGAAGC----
 T C G A C T A G C G T A C T A G A T C G C T A G C G A T A T C G C T G A G T C A A C T G A G T C T C G A G A T C A G C T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:3
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AGAGGGTGAAGCACTA----
----CNTTAAGTACTTAANG
 T C G A C T A G C G T A C T A G A T C G C T A G C G A T A T C G C T G A G T C A A C T G A G T C T C G A G A T C A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Atf1/MA0604.1/Jaspar

Match Rank:4
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AGAGGGTGAAGCACTA
-----ATGACGTA---
 T C G A C T A G C G T A C T A G A T C G C T A G C G A T A T C G C T G A G T C A A C T G A G T C T C G A G A T C A G C T C G T A
A C G T A C G T A C G T A C G T A C G T T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A A C G T A C G T A C G T

SPIC/MA0687.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGTGAAGCACTA
AAAAAGAGGAAGTA---
 A C G T T C G A C T A G C G T A C T A G A T C G C T A G C G A T A T C G C T G A G T C A A C T G A G T C T C G A G A T C A G C T C G T A
G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A A C G T A C G T A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGAGGGTGAAGCACTA
NNVDGGGYGGGGCYN--
 A C G T T C G A C T A G C G T A C T A G A T C G C T A G C G A T A T C G C T G A G T C A A C T G A G T C T C G A G A T C A G C T C G T A
T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A A C G T A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AGAGGGTGAAGCACTA
-----MTGATGCAAT-
 T C G A C T A G C G T A C T A G A T C G C T A G C G A T A T C G C T G A G T C A A C T G A G T C T C G A G A T C A G C T C G T A
A C G T A C G T A C G T A C G T A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:AGAGGGTGAAGCACTA----
---NATTTAAGTACTTNAAA
 T C G A C T A G C G T A C T A G A T C G C T A G C G A T A T C G C T G A G T C A A C T G A G T C T C G A G A T C A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.51
Offset:8
Orientation:forward strand
Alignment:AGAGGGTGAAGCACTA--
--------AAGCACTTAA
 T C G A C T A G C G T A C T A G A T C G C T A G C G A T A T C G C T G A G T C A A C T G A G T C T C G A G A T C A G C T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

JUN/MA0488.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGAGGGTGAAGCACTA
--AAGATGATGTCAT-
 T C G A C T A G C G T A C T A G A T C G C T A G C G A T A T C G C T G A G T C A A C T G A G T C T C G A G A T C A G C T C G T A
A C G T A C G T C G T A C G T A C T A G T C G A A C G T A C T G C G T A A C G T A T C G G A C T G T A C C G T A A G C T A C G T