Information for 3-TCMKTAYTTTGRA (Motif 4)

A C G T A G T C G T C A A C T G A C G T C T G A A G T C A C G T G A C T A C G T C T A G C T G A C G T A
Reverse Opposite:
A C G T A G C T A G T C C G T A C G T A C G T A C T A G A G C T C G T A G T A C A C G T A C T G C G T A
p-value:1e-13
log p-value:-3.128e+01
Information Content per bp:1.870
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.3 +/- 27.6bp
Average Position of motif in Background32.5 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:TCMKTAYTTTGRA----
-------TTTGAAACCG
 A C G T A G T C G T C A A C T G A C G T C T G A A G T C A C G T G A C T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.59
Offset:6
Orientation:forward strand
Alignment:TCMKTAYTTTGRA--
------ATTTGAATT
 A C G T A G T C G T C A A C T G A C G T C T G A A G T C A C G T G A C T A C G T C T A G C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCMKTAYTTTGRA
NATTTAAGTACTTANNA
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C T G A C G T C T G A A G T C A C G T G A C T A C G T C T A G C T G A C G T A
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TCMKTAYTTTGRA--
-----CCTTTGATGT
 A C G T A G T C G T C A A C T G A C G T C T G A A G T C A C G T G A C T A C G T C T A G C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

PB0083.1_Tcf7_1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCMKTAYTTTGRA-----
-NNTTCCTTTGATCTNNA
 A C G T A G T C G T C A A C T G A C G T C T G A A G T C A C G T G A C T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G A T C A G T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G C A

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCMKTAYTTTGRA-----
-NNTTCCTTTGATCTANA
 A C G T A G T C G T C A A C T G A C G T C T G A A G T C A C G T G A C T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TCMKTAYTTTGRA-
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T A G T C G T C A A C T G A C G T C T G A A G T C A C G T G A C T A C G T C T A G C T G A C G T A A C G T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

TCF7L2/MA0523.1/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TCMKTAYTTTGRA----
---TNCCTTTGATCTTN
 A C G T A G T C G T C A A C T G A C G T C T G A A G T C A C G T G A C T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T

PB0078.1_Srf_1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCMKTAYTTTGRA
TTCCATATATGGAA
 A C G T A C G T A G T C G T C A A C T G A C G T C T G A A G T C A C G T G A C T A C G T C T A G C T G A C G T A
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A

PB0162.1_Sfpi1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TCMKTAYTTTGRA
GGTTCCNNAATTTG--
 A C G T A C G T A C G T A C G T A G T C G T C A A C T G A C G T C T G A A G T C A C G T G A C T A C G T C T A G C T G A C G T A
C A T G A C T G C G A T G C A T A G T C A G T C A C T G C A T G G C T A C G T A C G A T G A C T C A G T C A T G A C G T A C G T