Information for 3-VAACTAAGCAACT (Motif 7)

T A G C C G T A C G T A A G T C A C G T C G T A C G T A A C T G G T A C C G T A G T C A G T A C A G C T
Reverse Opposite:
C T G A A C T G A C G T A C G T A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G
p-value:1e-10
log p-value:-2.450e+01
Information Content per bp:1.871
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.4 +/- 28.5bp
Average Position of motif in Background46.0 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0071.1_Sox4_1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----VAACTAAGCAACT
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T T A G C C G T A C G T A A G T C A C G T C G T A C G T A A C T G G T A C C G T A G T C A G T A C A G C T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----VAACTAAGCAACT
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T T A G C C G T A C G T A A G T C A C G T C G T A C G T A A C T G G T A C C G T A G T C A G T A C A G C T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PH0154.1_Prrx1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-VAACTAAGCAACT---
GTAACTAATTAACTACT
 A C G T T A G C C G T A C G T A A G T C A C G T C G T A C G T A A C T G G T A C C G T A G T C A G T A C A G C T A C G T A C G T A C G T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-VAACTAAGCAACT
GGAACAAAGR----
 A C G T T A G C C G T A C G T A A G T C A C G T C G T A C G T A A C T G G T A C C G T A G T C A G T A C A G C T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--VAACTAAGCAACT
GTTAACTAGN-----
 A C G T A C G T T A G C C G T A C G T A A G T C A C G T C G T A C G T A A C T G G T A C C G T A G T C A G T A C A G C T
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-VAACTAAGCAACT-
CTGAGTCAGCAATTT
 A C G T T A G C C G T A C G T A A G T C A C G T C G T A C G T A A C T G G T A C C G T A G T C A G T A C A G C T A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T

PB0042.1_Mafk_1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:VAACTAAGCAACT---
-AAGTCAGCANTTTTN
 T A G C C G T A C G T A A G T C A C G T C G T A C G T A A C T G G T A C C G T A G T C A G T A C A G C T A C G T A C G T A C G T
A C G T C T G A C G T A T C A G C G A T G T A C C G T A C A T G G T A C C T G A G C A T C G A T G C A T G C A T G C A T G C T A

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:VAACTAAGCAACT--
HWWGTCAGCAWWTTT
 T A G C C G T A C G T A A G T C A C G T C G T A C G T A A C T G G T A C C G T A G T C A G T A C A G C T A C G T A C G T
G T A C C G T A C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A C G A T G C A T G C A T G A C T

PH0108.1_Msx3/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--VAACTAAGCAACT-
CAAAACCAATTAATTT
 A C G T A C G T T A G C C G T A C G T A A G T C A C G T C G T A C G T A A C T G G T A C C G T A G T C A G T A C A G C T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

MAFF/MA0495.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--VAACTAAGCAACT---
GCTGAGTCAGCAATTTTT
 A C G T A C G T T A G C C G T A C G T A A G T C A C G T C G T A C G T A A C T G G T A C C G T A G T C A G T A C A G C T A C G T A C G T A C G T
A T C G G T A C G C A T C T A G C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A G C A T G C A T G C A T G A C T G C A T