Information for 1-RTSCWTAAAGCYA (Motif 3)

C T G A A C G T A T G C A G T C C G A T A C G T C G T A C G T A C G T A A C T G A G T C A G C T C T G A
Reverse Opposite:
A G C T C T G A A C T G A G T C A C G T A C G T A C G T C G T A C G T A A C T G A T C G C G T A A G C T
p-value:1e-12
log p-value:-2.796e+01
Information Content per bp:1.878
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets77.4 +/- 10.5bp
Average Position of motif in Background30.5 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RTSCWTAAAGCYA
NGYCATAAAWCH-
 C T G A A C G T A T G C A G T C C G A T A C G T C G T A C G T A C G T A A C T G A G T C A G C T C T G A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RTSCWTAAAGCYA
GGCCATAAATCA-
 C T G A A C G T A T G C A G T C C G A T A C G T C G T A C G T A C G T A A C T G A G T C A G C T C T G A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:RTSCWTAAAGCYA
GGCCATAAATCA-
 C T G A A C G T A T G C A G T C C G A T A C G T C G T A C G T A C G T A A C T G A G T C A G C T C T G A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RTSCWTAAAGCYA
AAGCCATAAAA---
 A C G T C T G A A C G T A T G C A G T C C G A T A C G T C G T A C G T A C G T A A C T G A G T C A G C T C T G A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:RTSCWTAAAGCYA
GGCCATAAATCAC
 C T G A A C G T A T G C A G T C C G A T A C G T C G T A C G T A C G T A A C T G A G T C A G C T C T G A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

PH0056.1_Hoxa9/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--RTSCWTAAAGCYA--
ACGGCCATAAAATTAAT
 A C G T A C G T C T G A A C G T A T G C A G T C C G A T A C G T C G T A C G T A C G T A A C T G A G T C A G C T C T G A A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----RTSCWTAAAGCYA
AAAATATGCATAATAAA-
 A C G T A C G T A C G T A C G T A C G T C T G A A C G T A T G C A G T C C G A T A C G T C G T A C G T A C G T A A C T G A G T C A G C T C T G A
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:RTSCWTAAAGCYA
-GCCATAAATCA-
 C T G A A C G T A T G C A G T C C G A T A C G T C G T A C G T A C G T A A C T G A G T C A G C T C T G A
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:9
Score:0.52
Offset:5
Orientation:forward strand
Alignment:RTSCWTAAAGCYA-
-----AAAAGTCAA
 C T G A A C G T A T G C A G T C C G A T A C G T C G T A C G T A C G T A A C T G A G T C A G C T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:RTSCWTAAAGCYA
-GCAATAAAA---
 C T G A A C G T A T G C A G T C C G A T A C G T C G T A C G T A C G T A A C T G A G T C A G C T C T G A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T