Information for 9-CCGYGRCTTT (Motif 21)

A G T C A G T C A T C G A G T C A C T G C T A G A G T C A C G T A C G T A C G T
Reverse Opposite:
G T C A C G T A C G T A A C T G A G T C A G T C C T A G A T G C C T A G A C T G
p-value:1e-4
log p-value:-1.058e+01
Information Content per bp:1.881
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif4.14%
Number of Background Sequences with motif192.5
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets55.5 +/- 27.0bp
Average Position of motif in Background54.5 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCGYGRCTTT-
--TTGACTTTT
 A G T C A G T C A T C G A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCGYGRCTTT
NCGTGACN--
 A G T C A G T C A T C G A G T C A C T G C T A G A G T C A C G T A C G T A C G T
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCGYGRCTTT-
-BNTGDCCTTG
 A G T C A G T C A T C G A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

Zfx/MA0146.2/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCGYGRCTTT
GGGGCCGAGGCCTG
 A C G T A C G T A C G T A C G T A G T C A G T C A T C G A G T C A C T G C T A G A G T C A C G T A C G T A C G T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCGYGRCTTT
--GTGACCTT
 A G T C A G T C A T C G A G T C A C T G C T A G A G T C A C G T A C G T A C G T
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCGYGRCTTT--
--NTGACCTTGA
 A G T C A G T C A T C G A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

PB0136.1_IRC900814_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCGYGRCTTT----
TTTTACGACTTTCCAT
 A C G T A C G T A G T C A G T C A T C G A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T

PB0180.1_Sp4_2/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CCGYGRCTTT-
NNGGCCACGCCTTTN
 A C G T A C G T A C G T A C G T A G T C A G T C A T C G A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CCGYGRCTTT---
---TGACCTTGAN
 A G T C A G T C A T C G A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCGYGRCTTT-----
NNNNATGACCTTGANTN
 A C G T A C G T A G T C A G T C A T C G A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A