Information for 11-ATCGATGACA (Motif 42)

C T G A A C G T A G T C C T A G C T G A C A G T A T C G G T C A A T G C C T G A
Reverse Opposite:
A G C T A T C G A C G T A T G C G T C A A G C T G A T C A C T G C G T A A G C T
p-value:1e-7
log p-value:-1.629e+01
Information Content per bp:1.844
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif13.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets33.2 +/- 21.1bp
Average Position of motif in Background41.5 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CUX2/MA0755.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--ATCGATGACA
TTATCGATTA--
 A C G T A C G T C T G A A C G T A G T C C T A G C T G A C A G T A T C G G T C A A T G C C T G A
C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A A C G T A C G T

CUX1/MA0754.1/Jaspar

Match Rank:2
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--ATCGATGACA
NTATCGATTA--
 A C G T A C G T C T G A A C G T A G T C C T A G C T G A C A G T A T C G G T C A A T G C C T G A
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATCGATGACA
DGATCRATAN--
 A C G T A C G T C T G A A C G T A G T C C T A G C T G A C A G T A T C G G T C A A T G C C T G A
C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C A C G T A C G T

PAX7/MA0680.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ATCGATGACA
TAATCGATTA--
 A C G T A C G T C T G A A C G T A G T C C T A G C T G A C A G T A T C G G T C A A T G C C T G A
C G A T T G C A G T C A G A C T A G T C T C A G C G T A C G A T G A C T G C T A A C G T A C G T

Atf3/MA0605.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:ATCGATGACA-
---GATGACGT
 C T G A A C G T A G T C C T A G C T G A C A G T A T C G G T C A A T G C C T G A A C G T
A C G T A C G T A C G T A T C G C T G A A C G T A C T G C G T A A G T C C T A G G A C T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ATCGATGACA
HNRAATCAAT----
 A C G T A C G T A C G T A C G T C T G A A C G T A G T C C T A G C T G A C A G T A T C G G T C A A T G C C T G A
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.64
Offset:4
Orientation:forward strand
Alignment:ATCGATGACA-
----TTGACAG
 C T G A A C G T A G T C C T A G C T G A C A G T A T C G G T C A A T G C C T G A A C G T
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:ATCGATGACA
---CATGAC-
 C T G A A C G T A G T C C T A G C T G A C A G T A T C G G T C A A T G C C T G A
A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T

PAX3/MA0780.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATCGATGACA
TAATCGATTA--
 A C G T A C G T C T G A A C G T A G T C C T A G C T G A C A G T A T C G G T C A A T G C C T G A
C G A T T C G A G T C A A G C T A G T C T C A G C T G A A C G T G A C T G C T A A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ATCGATGACA
ATGATKGATGRC-
 A C G T A C G T A C G T C T G A A C G T A G T C C T A G C T G A C A G T A T C G G T C A A T G C C T G A
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T