Information for 22-VCGGGGCACACGCAGG (Motif 39)

T C G A G T A C T A C G C A T G C A T G T C A G T A G C C G T A T A G C T G C A T G A C C T A G A T G C C G T A T C A G A T C G
Reverse Opposite:
A T G C A G T C C G A T T A C G G A T C A C T G A C G T A T C G C G A T A T C G A G T C G T A C G T A C A T G C C A T G A G C T
p-value:1e-7
log p-value:-1.815e+01
Information Content per bp:1.597
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.44%
Number of Background Sequences with motif402.2
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets50.2 +/- 22.0bp
Average Position of motif in Background49.7 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.58
Offset:8
Orientation:reverse strand
Alignment:VCGGGGCACACGCAGG
--------CACGCA--
 T C G A G T A C T A C G C A T G C A T G T C A G T A G C C G T A T A G C T G C A T G A C C T A G A T G C C G T A T C A G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:VCGGGGCACACGCAGG
-CCAGGAACAG-----
 T C G A G T A C T A C G C A T G C A T G T C A G T A G C C G T A T A G C T G C A T G A C C T A G A T G C C G T A T C A G A T C G
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:VCGGGGCACACGCAGG
---GGCCACACCCAN-
 T C G A G T A C T A C G C A T G C A T G T C A G T A G C C G T A T A G C T G C A T G A C C T A G A T G C C G T A T C A G A T C G
A C G T A C G T A C G T C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:VCGGGGCACACGCAGG
----GCCACACCCA--
 T C G A G T A C T A C G C A T G C A T G T C A G T A G C C G T A T A G C T G C A T G A C C T A G A T G C C G T A T C A G A T C G
A C G T A C G T A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.56
Offset:10
Orientation:reverse strand
Alignment:VCGGGGCACACGCAGG
----------CACAGN
 T C G A G T A C T A C G C A T G C A T G T C A G T A G C C G T A T A G C T G C A T G A C C T A G A T G C C G T A T C A G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:VCGGGGCACACGCAGG-
-AGCGGCACACACGCAA
 T C G A G T A C T A C G C A T G C A T G T C A G T A G C C G T A T A G C T G C A T G A C C T A G A T G C C G T A T C A G A T C G A C G T
A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.55
Offset:10
Orientation:forward strand
Alignment:VCGGGGCACACGCAGG---
----------AACAGGTGT
 T C G A G T A C T A C G C A T G C A T G T C A G T A G C C G T A T A G C T G C A T G A C C T A G A T G C C G T A T C A G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:8
Score:0.55
Offset:11
Orientation:forward strand
Alignment:VCGGGGCACACGCAGG-----
-----------VCAGGTRDRY
 T C G A G T A C T A C G C A T G C A T G T C A G T A G C C G T A T A G C T G C A T G A C C T A G A T G C C G T A T C A G A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:VCGGGGCACACGCAGG
-----TBGCACGCAA-
 T C G A G T A C T A C G C A T G C A T G T C A G T A G C C G T A T A G C T G C A T G A C C T A G A T G C C G T A T C A G A T C G
A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--VCGGGGCACACGCAGG
TACATGTGCACATAAAA-
 A C G T A C G T T C G A G T A C T A C G C A T G C A T G T C A G T A G C C G T A T A G C T G C A T G A C C T A G A T G C C G T A T C A G A T C G
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T