Information for 2-TCCCACAGCACGG (Motif 2)

A C G T T G A C A G T C A G T C T C G A A T G C C T G A T A C G G T A C C T G A T G A C C T A G C T A G
Reverse Opposite:
G A T C G A T C A C T G A G C T A C T G A G T C A G C T A T C G A G C T C T A G C T A G A C T G T G C A
p-value:1e-16
log p-value:-3.833e+01
Information Content per bp:1.694
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.5 +/- 23.2bp
Average Position of motif in Background58.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TCCCACAGCACGG--
---CACAGCAGGGGG
 A C G T T G A C A G T C A G T C T C G A A T G C C T G A T A C G G T A C C T G A T G A C C T A G C T A G A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCCCACAGCACGG--
CCACACAGCAGGAGA
 A C G T T G A C A G T C A G T C T C G A A T G C C T G A T A C G G T A C C T G A T G A C C T A G C T A G A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCCCACAGCACGG--
CCACACAGCAGGAGA
 A C G T T G A C A G T C A G T C T C G A A T G C C T G A T A C G G T A C C T G A T G A C C T A G C T A G A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TCCCACAGCACGG----
--DCHCAGCAGGRGGCC
 A C G T T G A C A G T C A G T C T C G A A T G C C T G A T A C G G T A C C T G A T G A C C T A G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0114.1_Egr1_2/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCCCACAGCACGG
NNAGTCCCACTCNNNN-
 A C G T A C G T A C G T A C G T A C G T T G A C A G T C A G T C T C G A A T G C C T G A T A C G G T A C C T G A T G A C C T A G C T A G
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TCCCACAGCACGG
NYTTCCCGCC------
 A C G T A C G T A C G T A C G T T G A C A G T C A G T C T C G A A T G C C T G A T A C G G T A C C T G A T G A C C T A G C T A G
T A G C A G C T G A C T A G C T A T G C T G A C T A G C C A T G A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TCCCACAGCACGG--
GAGCACAGCAGGACA
 A C G T T G A C A G T C A G T C T C G A A T G C C T G A T A C G G T A C C T G A T G A C C T A G C T A G A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TCCCACAGCACGG
HTTTCCCASG------
 A C G T A C G T A C G T A C G T T G A C A G T C A G T C T C G A A T G C C T G A T A C G G T A C C T G A T G A C C T A G C T A G
G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:9
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:TCCCACAGCACGG--
-------GCACGTNC
 A C G T T G A C A G T C A G T C T C G A A T G C C T G A T A C G G T A C C T G A T G A C C T A G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TCCCACAGCACGG--
AATCGCACTGCATTCCG
 A C G T A C G T A C G T T G A C A G T C A G T C T C G A A T G C C T G A T A C G G T A C C T G A T G A C C T A G C T A G A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G