Information for 9-TCTTTGASTGCAMTCT (Motif 15)

C A G T A G T C G A C T A C G T A C G T A T C G G C T A T A C G C G A T A C T G G T A C C G T A T G A C G A C T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A C T G C G A T A C T G A G T C G C T A A T G C C A G T T A G C C G T A T G C A C G T A A C T G G T C A
p-value:1e-11
log p-value:-2.557e+01
Information Content per bp:1.723
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.6 +/- 20.8bp
Average Position of motif in Background33.8 +/- 6.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCTTTGASTGCAMTCT
CCATTGTATGCAAAT-
 C A G T A G T C G A C T A C G T A C G T A T C G G C T A T A C G C G A T A C T G G T A C C G T A T G A C G A C T A G T C A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:TCTTTGASTGCAMTCT
--CTTGAGTGGCT---
 C A G T A G T C G A C T A C G T A C G T A T C G G C T A T A C G C G A T A C T G G T A C C G T A T G A C G A C T A G T C A C G T
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:3
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TCTTTGASTGCAMTCT
GTATTGACAGCTNNTT
 C A G T A G T C G A C T A C G T A C G T A T C G G C T A T A C G C G A T A C T G G T A C C G T A T G A C G A C T A G T C A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

Hmx1/MA0896.1/Jaspar

Match Rank:4
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--TCTTTGASTGCAMTCT
ANNCATTAATTGCTNGN-
 A C G T A C G T C A G T A G T C G A C T A C G T A C G T A T C G G C T A T A C G C G A T A C T G G T A C C G T A T G A C G A C T A G T C A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:5
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--TCTTTGASTGCAMTCT
ANNCATTAATTGCTNGN-
 A C G T A C G T C A G T A G T C G A C T A C G T A C G T A T C G G C T A T A C G C G A T A C T G G T A C C G T A T G A C G A C T A G T C A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:6
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:TCTTTGASTGCAMTCT
GGATTGACAGGTCNTT
 C A G T A G T C G A C T A C G T A C G T A T C G G C T A T A C G C G A T A C T G G T A C C G T A T G A C G A C T A G T C A C G T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

PB0104.1_Zscan4_1/Jaspar

Match Rank:7
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:TCTTTGASTGCAMTCT--
-NTNTATGTGCACATNNN
 C A G T A G T C G A C T A C G T A C G T A T C G G C T A T A C G C G A T A C T G G T A C C G T A T G A C G A C T A G T C A C G T A C G T A C G T
A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:TCTTTGASTGCAMTCT
---TTGCGTGCVA---
 C A G T A G T C G A C T A C G T A C G T A T C G G C T A T A C G C G A T A C T G G T A C C G T A T G A C G A C T A G T C A C G T
A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:9
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:TCTTTGASTGCAMTCT-----
----NNNCTGATATCTCNNNN
 C A G T A G T C G A C T A C G T A C G T A T C G G C T A T A C G C G A T A C T G G T A C C G T A T G A C G A C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

PH0102.1_Meis1/Jaspar

Match Rank:10
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:TCTTTGASTGCAMTCT
NTATTGACAGCTNNTT
 C A G T A G T C G A C T A C G T A C G T A T C G G C T A T A C G C G A T A C T G G T A C C G T A T G A C G A C T A G T C A C G T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T