Information for 1-GGGCGAGCTGAGG (Motif 6)

C T A G C T A G A T C G A T G C T A C G C T G A C A T G T G A C C A G T A C T G C T G A A C T G A C T G
Reverse Opposite:
A G T C G T A C A G C T A G T C G T C A A C T G G T A C G A C T A G T C A T C G A T G C A G T C A G T C
p-value:1e-13
log p-value:-3.115e+01
Information Content per bp:1.775
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif58.8
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets46.7 +/- 22.9bp
Average Position of motif in Background47.7 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGGCGAGCTGAGG---
-GGTCANYTGAGGWCA
 C T A G C T A G A T C G A T G C T A C G C T G A C A T G T G A C C A G T A C T G C T G A A C T G A C T G A C G T A C G T A C G T
A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGGCGAGCTGAGG
-GGCGCGCT----
 C T A G C T A G A T C G A T G C T A C G C T G A C A T G T G A C C A G T A C T G C T G A A C T G A C T G
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T

PB0107.1_Ascl2_2/Jaspar

Match Rank:3
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGGCGAGCTGAGG
NATNGGGNGGGGANAN-
 A C G T A C G T A C G T A C G T C T A G C T A G A T C G A T G C T A C G C T G A C A T G T G A C C A G T A C T G C T G A A C T G A C T G
C T G A T G C A G A C T T C G A C T A G C T A G T C A G G A T C A C T G C A T G A T C G C A T G G C T A A C G T C T G A T A C G A C G T

PB0039.1_Klf7_1/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GGGCGAGCTGAGG
NNAGGGGCGGGGTNNA-
 A C G T A C G T A C G T A C G T C T A G C T A G A T C G A T G C T A C G C T G A C A T G T G A C C A G T A C T G C T G A A C T G A C T G
G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A A C G T

EGR1/MA0162.2/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGGCGAGCTGAGG
GGCGGGGGCGGGGG
 A C G T C T A G C T A G A T C G A T G C T A C G C T G A C A T G T G A C C A G T A C T G C T G A A C T G A C T G
A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GGGCGAGCTGAGG
---CCTGCTGAGH
 C T A G C T A G A T C G A T G C T A C G C T G A C A T G T G A C C A G T A C T G C T G A A C T G A C T G
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0202.1_Zfp410_2/Jaspar

Match Rank:7
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------GGGCGAGCTGAGG
NNTNNGGGGCGGNGNGN--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G A T C G A T G C T A C G C T G A C A T G T G A C C A G T A C T G C T G A A C T G A C T G
C G T A C T G A C A G T C G A T G C A T T A C G A C T G T A C G A C T G T G A C T C A G C T A G C T A G C T A G C A G T C T A G T C G A A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GGGCGAGCTGAGG
ATAAGGGCGCGCGAT--
 A C G T A C G T A C G T A C G T C T A G C T A G A T C G A T G C T A C G C T G A C A T G T G A C C A G T A C T G C T G A A C T G A C T G
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GGGCGAGCTGAGG
GAGSCCGAGC-----
 A C G T A C G T C T A G C T A G A T C G A T G C T A C G C T G A C A T G T G A C C A G T A C T G C T G A A C T G A C T G
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GGGCGAGCTGAGG
-RGKGGGCGGAGC
 C T A G C T A G A T C G A T G C T A C G C T G A C A T G T G A C C A G T A C T G C T G A A C T G A C T G
A C G T C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C