Information for 3-ATRCAKACCA (Motif 5)

G T C A A C G T C T A G A G T C C G T A A C G T G C T A G A T C A T G C C G T A
Reverse Opposite:
A C G T A T C G C T A G C G A T T G C A C G A T A C T G A G T C C G T A A C G T
p-value:1e-13
log p-value:-3.201e+01
Information Content per bp:1.771
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.70%
Number of Background Sequences with motif64.2
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets49.1 +/- 27.0bp
Average Position of motif in Background45.5 +/- 40.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TEAD3/MA0808.1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:ATRCAKACCA
--ACATTCCA
 G T C A A C G T C T A G A G T C C G T A A C G T G C T A G A T C A T G C C G T A
A C G T A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------ATRCAKACCA-
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T C T A G A G T C C G T A A C G T G C T A G A T C A T G C C G T A A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

TEAD1/MA0090.2/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ATRCAKACCA-
-CACATTCCAT
 G T C A A C G T C T A G A G T C C G T A A C G T G C T A G A T C A T G C C G T A A C G T
A C G T G A T C T C G A T G A C G T C A A G C T G C A T G T A C A G T C C G T A G A C T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ATRCAKACCA-
ATATGCAAATNNN
 A C G T A C G T G T C A A C G T C T A G A G T C C G T A A C G T G C T A G A T C A T G C C G T A A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATRCAKACCA---
ATTTGCATAACAAAG
 A C G T A C G T G T C A A C G T C T A G A G T C C G T A A C G T G C T A G A T C A T G C C G T A A C G T A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ATRCAKACCA--
ACATTCATGACACG
 A C G T A C G T G T C A A C G T C T A G A G T C C G T A A C G T G C T A G A T C A T G C C G T A A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0098.1_Zfp410_1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATRCAKACCA-----
NNNTCCATCCCATAANN
 A C G T A C G T G T C A A C G T C T A G A G T C C G T A A C G T G C T A G A T C A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATRCAKACCA---
ATTTGCATACAATGG
 A C G T A C G T G T C A A C G T C T A G A G T C C G T A A C G T G C T A G A T C A T G C C G T A A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------ATRCAKACCA-
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T C T A G A G T C C G T A A C G T G C T A G A T C A T G C C G T A A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ATRCAKACCA---
ATTTGCATAACAATG
 A C G T A C G T G T C A A C G T C T A G A G T C C G T A A C G T G C T A G A T C A T G C C G T A A C G T A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G