Information for 13-GGSCAGRCAGGCTGVG (Motif 33)

T C A G A T C G T A G C T A G C C T G A A T C G T C G A T A G C C T G A A T C G T A C G T A G C C G A T A T C G T C G A T A C G
Reverse Opposite:
A T G C A G C T A T G C G C T A A T C G A T G C T A G C A G C T A T C G A G C T T A G C G A C T A T C G A T C G T A G C A G T C
p-value:1e-6
log p-value:-1.518e+01
Information Content per bp:1.354
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.0 +/- 21.3bp
Average Position of motif in Background48.5 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGSCAGRCAGGCTGVG
--CCAGACAG------
 T C A G A T C G T A G C T A G C C T G A A T C G T C G A T A G C C T G A A T C G T A C G T A G C C G A T A T C G T C G A T A C G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGSCAGRCAGGCTGVG
--CCAGACRSVB----
 T C A G A T C G T A G C T A G C C T G A A T C G T C G A T A G C C T G A A T C G T A C G T A G C C G A T A T C G T C G A T A C G
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GGSCAGRCAGGCTGVG----------
------YCAGGCWCAGTACCAGGCTC
 T C A G A T C G T A G C T A G C C T G A A T C G T C G A T A G C C T G A A T C G T A C G T A G C C G A T A T C G T C G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGSCAGRCAGGCTGVG
AAGGKGRCGCAGGCA---
 A C G T A C G T T C A G A T C G T A G C T A G C C T G A A T C G T C G A T A G C C T G A A T C G T A C G T A G C C G A T A T C G T C G A T A C G
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.56
Offset:7
Orientation:forward strand
Alignment:GGSCAGRCAGGCTGVG-
-------CCTGCTGAGH
 T C A G A T C G T A G C T A G C C T G A A T C G T C G A T A G C C T G A A T C G T A C G T A G C C G A T A T C G T C G A T A C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGSCAGRCAGGCTGVG
CAAATCCAGACATCACA--
 A C G T A C G T A C G T T C A G A T C G T A G C T A G C C T G A A T C G T C G A T A G C C T G A A T C G T A C G T A G C C G A T A T C G T C G A T A C G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGSCAGRCAGGCTGVG-
--SCAGYCADGCATGAC
 T C A G A T C G T A G C T A G C C T G A A T C G T C G A T A G C C T G A A T C G T A C G T A G C C G A T A T C G T C G A T A C G A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGSCAGRCAGGCTGVG
-----CACAGN-----
 T C A G A T C G T A G C T A G C C T G A A T C G T C G A T A G C C T G A A T C G T A C G T A G C C G A T A T C G T C G A T A C G
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GGSCAGRCAGGCTGVG
AGGTGNCAGACAG------
 A C G T A C G T A C G T T C A G A T C G T A G C T A G C C T G A A T C G T C G A T A G C C T G A A T C G T A C G T A G C C G A T A T C G T C G A T A C G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:10
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:GGSCAGRCAGGCTGVG-----
-------CAGGCCNNGGCCNN
 T C A G A T C G T A G C T A G C C T G A A T C G T C G A T A G C C T G A A T C G T A C G T A G C C G A T A T C G T C G A T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C