Information for 1-AAAATGGCGG (Motif 1)

G C T A C G T A T G C A C T G A C G A T C T A G A C T G T G A C C A T G A T C G
Reverse Opposite:
T A G C G T A C A C T G T G A C A G T C C G T A A G C T A C G T G C A T C G A T
p-value:1e-16
log p-value:-3.744e+01
Information Content per bp:1.688
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif6.69%
Number of Background Sequences with motif829.7
Percentage of Background Sequences with motif1.80%
Average Position of motif in Targets59.7 +/- 24.5bp
Average Position of motif in Background49.2 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-AAAATGGCGG-
CAAGATGGCGGC
 A C G T G C T A C G T A T G C A C T G A C G A T C T A G A C T G T G A C C A T G A T C G A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-AAAATGGCGG-
CAAGATGGCGGC
 A C G T G C T A C G T A T G C A C T G A C G A T C T A G A C T G T G A C C A T G A T C G A C G T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:AAAATGGCGG--
-TAATGGCGGNC
 G C T A C G T A T G C A C T G A C G A T C T A G A C T G T G A C C A T G A T C G A C G T A C G T
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AAAATGGCGG------
NAGANTGGCGGGGNGNA
 A C G T G C T A C G T A T G C A C T G A C G A T C T A G A C T G T G A C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

E2F2/MA0864.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AAAATGGCGG------
AAAATGGCGCCATTTT
 G C T A C G T A T G C A C T G A C G A T C T A G A C T G T G A C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

E2F3/MA0469.2/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AAAATGGCGG-------
AAAAATGGCGCCATTTTT
 A C G T G C T A C G T A T G C A C T G A C G A T C T A G A C T G T G A C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AAAATGGCGG
RACAAWGG---
 A C G T G C T A C G T A T G C A C T G A C G A T C T A G A C T G T G A C C A T G A T C G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAAATGGCGG
AACAAAGG---
 A C G T G C T A C G T A T G C A C T G A C G A T C T A G A C T G T G A C C A T G A T C G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AAAATGGCGG
VRAACAATGG---
 A C G T A C G T A C G T G C T A C G T A T G C A C T G A C G A T C T A G A C T G T G A C C A T G A T C G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AAAATGGCGG--
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C G T G C T A C G T A T G C A C T G A C G A T C T A G A C T G T G A C C A T G A T C G A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A