Information for 11-GCAATTCACT (Motif 22)

C T A G A G T C T G C A C G T A A C G T G A C T A G T C C G T A A G T C C G A T
Reverse Opposite:
C G T A C T A G C G A T A C T G C T G A G T C A A C G T A C G T A C T G A G T C
p-value:1e-6
log p-value:-1.507e+01
Information Content per bp:1.768
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif113.1
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets53.5 +/- 20.0bp
Average Position of motif in Background47.7 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCAATTCACT----
AATCAATTCAATAATT
 A C G T A C G T C T A G A G T C T G C A C G T A A C G T G A C T A G T C C G T A A G T C C G A T A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCAATTCACT
TCCAATCCACA
 A C G T C T A G A G T C T G C A C G T A A C G T G A C T A G T C C G T A A G T C C G A T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCAATTCACT--
SSAATCCACANN
 C T A G A G T C T G C A C G T A A C G T G A C T A G T C C G T A A G T C C G A T A C G T A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GCAATTCACT---
---MRSCACTYAA
 C T A G A G T C T G C A C G T A A C G T G A C T A G T C C G T A A G T C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCAATTCACT
GGCCATTAAC-
 A C G T C T A G A G T C T G C A C G T A A C G T G A C T A G T C C G T A A G T C C G A T
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCAATTCACT
---ATCCAC-
 C T A G A G T C T G C A C G T A A C G T G A C T A G T C C G T A A G T C C G A T
A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCAATTCACT-------
-TAAGCCACTTAACATT
 C T A G A G T C T G C A C G T A A C G T G A C T A G T C C G T A A G T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCAATTCACT-------
-TAAGCCACTTGAAATT
 C T A G A G T C T G C A C G T A A C G T G A C T A G T C C G T A A G T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCAATTCACT---
---AASCACTCAA
 C T A G A G T C T G C A C G T A A C G T G A C T A G T C C G T A A G T C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PH0114.1_Nkx2-5/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCAATTCACT-------
-TAAGCCACTTGAATTT
 C T A G A G T C T G C A C G T A A C G T G A C T A G T C C G T A A G T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T