Information for 9-CTCCSGGAKG (Motif 21)

A T G C A C G T A G T C A G T C A T C G A T C G C T A G C G T A A C T G T A C G
Reverse Opposite:
A T G C G T A C C G A T A G T C A T G C A T G C C T A G T C A G G T C A A T C G
p-value:1e-6
log p-value:-1.590e+01
Information Content per bp:1.836
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.57%
Number of Background Sequences with motif564.9
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets39.4 +/- 23.6bp
Average Position of motif in Background51.4 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF/MA0686.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTCCSGGAKG--
-ACCCGGATGTA
 A T G C A C G T A G T C A G T C A T C G A T C G C T A G C G T A A C T G T A C G A C G T A C G T
A C G T C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTCCSGGAKG
TTCCNGGAAG
 A T G C A C G T A G T C A G T C A T C G A T C G C T A G C G T A A C T G T A C G
G C A T C A G T T G A C A G T C T A G C T C A G C A T G G T C A C T G A T C A G

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTCCSGGAKG-
-ANCAGGATGT
 A T G C A C G T A G T C A G T C A T C G A T C G C T A G C G T A A C T G T A C G A C G T
A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T

ETV5/MA0765.1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTCCSGGAKG--
--ACCGGAAGTG
 A T G C A C G T A G T C A G T C A T C G A T C G C T A G C G T A A C T G T A C G A C G T A C G T
A C G T A C G T C T G A T A G C T G A C A C T G A C T G G C T A G C T A T C A G A G C T C T A G

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCCSGGAKG
GCTCCG-----
 A C G T A T G C A C G T A G T C A G T C A T C G A T C G C T A G C G T A A C T G T A C G
A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T

PB0077.1_Spdef_1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CTCCSGGAKG---
AANNATCCGGATGTNN
 A C G T A C G T A C G T A T G C A C G T A G T C A G T C A T C G A T C G C T A G C G T A A C T G T A C G A C G T A C G T A C G T
T C G A C T G A C T G A C G T A C G T A G A C T T A G C T G A C A C T G A C T G C G T A G C A T T C A G G A C T C T G A A G T C

PB0103.1_Zic3_1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CTCCSGGAKG--
NCCCCCCCGGGGGGN
 A C G T A C G T A C G T A T G C A C G T A G T C A G T C A T C G A T C G C T A G C G T A A C T G T A C G A C G T A C G T
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

ETV4/MA0764.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTCCSGGAKG--
--ACCGGAAGTA
 A T G C A C G T A G T C A G T C A T C G A T C G C T A G C G T A A C T G T A C G A C G T A C G T
A C G T A C G T C T G A T A G C T G A C A T C G A C T G C T G A G C T A T C A G A G C T C T G A

ETV1/MA0761.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTCCSGGAKG--
--ACCGGAAGTA
 A T G C A C G T A G T C A G T C A T C G A T C G C T A G C G T A A C T G T A C G A C G T A C G T
A C G T A C G T C T G A T A G C T G A C A C T G A C T G G C T A G C T A T C A G A G C T C T G A

PB0101.1_Zic1_1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTCCSGGAKG--
CACCCCCGGGGGGG
 A C G T A C G T A T G C A C G T A G T C A G T C A T C G A T C G C T A G C G T A A C T G T A C G A C G T A C G T
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G