Information for 3-GGGAGAGACAGGG (Motif 4)

T C A G A C T G A C T G C G T A A C T G G C T A C T A G C G T A A G T C C T G A T A C G C T A G C T A G
Reverse Opposite:
A G T C A G T C A T G C A G C T C T A G G A C T A G T C C A G T G T A C A C G T A G T C A G T C A G T C
p-value:1e-12
log p-value:-2.830e+01
Information Content per bp:1.776
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.48%
Number of Background Sequences with motif133.7
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets47.7 +/- 22.8bp
Average Position of motif in Background54.6 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGGAGAGACAGGG
NTGATTGACAGN-
 T C A G A C T G A C T G C G T A A C T G G C T A C T A G C G T A A G T C C T G A T A C G C T A G C T A G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGGAGAGACAGGG
AGGTGNCAGACAG--
 A C G T A C G T T C A G A C T G A C T G C G T A A C T G G C T A C T A G C G T A A G T C C T G A T A C G C T A G C T A G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGGAGAGACAGGG
-TGAGTGACAGSC
 T C A G A C T G A C T G C G T A A C T G G C T A C T A G C G T A A G T C C T G A T A C G C T A G C T A G
A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGGAGAGACAGGG
BTGABTGACAGS-
 T C A G A C T G A C T G C G T A A C T G G C T A C T A G C G T A A G T C C T G A T A C G C T A G C T A G
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T

MZF1/MA0056.1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGGAGAGACAGGG
TGGGGA---------
 A C G T A C G T T C A G A C T G A C T G C G T A A C T G G C T A C T A G C G T A A G T C C T G A T A C G C T A G C T A G
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGGAGAGACAGGG
DGGGYGKGGC----
 A C G T T C A G A C T G A C T G C G T A A C T G G C T A C T A G C G T A A G T C C T G A T A C G C T A G C T A G
C G T A C T A G A C T G A C T G G A C T C T A G C A G T C T A G C A T G G A T C A C G T A C G T A C G T A C G T

KLF5/MA0599.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGGAGAGACAGGG
GGGGNGGGGC----
 A C G T T C A G A C T G A C T G C G T A A C T G G C T A C T A G C G T A A G T C C T G A T A C G C T A G C T A G
C T A G C T A G A C T G A C T G G A T C A C T G C A T G C T A G C T A G T G A C A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGGAGAGACAGGG
AGGTGHCAGACA---
 A C G T A C G T T C A G A C T G A C T G C G T A A C T G G C T A C T A G C G T A A G T C C T G A T A C G C T A G C T A G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGGAGAGACAGGG
TGGGGAAGGGCM---
 A C G T A C G T T C A G A C T G A C T G C G T A A C T G G C T A C T A G C G T A A G T C C T G A T A C G C T A G C T A G
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GGGAGAGACAGGG
CGGAGC-------
 T C A G A C T G A C T G C G T A A C T G G C T A C T A G C G T A A G T C C T G A T A C G C T A G C T A G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T