Information for 16-GCTAGCACAA (Motif 31)

A C T G A G T C G A C T C G T A A C T G A G T C C G T A A G T C C G T A G T C A
Reverse Opposite:
A C G T A C G T A C T G A C G T A C T G A G T C A C G T C T G A A C T G A G T C
p-value:1e-6
log p-value:-1.508e+01
Information Content per bp:1.924
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif36.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets29.8 +/- 25.1bp
Average Position of motif in Background43.3 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCTAGCACAA
CCAGGAACAG
 A C T G A G T C G A C T C G T A A C T G A G T C C G T A A G T C C G T A G T C A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCTAGCACAA------
CGAAGCACACAAAATA
 A C T G A G T C G A C T C G T A A C T G A G T C C G T A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCTAGCACAA---
---RNAACAATGG
 A C T G A G T C G A C T C G T A A C T G A G T C C G T A A G T C C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCTAGCACAA--
NWAACCACADNN
 A C T G A G T C G A C T C G T A A C T G A G T C C G T A A G T C C G T A G T C A A C G T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCTAGCACAA------
-CTCACACAATGGCGC
 A C T G A G T C G A C T C G T A A C T G A G T C C G T A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

GLI2/MA0734.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTAGCACAA--
GCGACCACACTG
 A C T G A G T C G A C T C G T A A C T G A G T C C G T A A G T C C G T A G T C A A C G T A C G T
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

PB0041.1_Mafb_1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCTAGCACAA--
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G A C T C G T A A C T G A G T C C G T A A G T C C G T A G T C A A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCTAGCACAA------
AGCGGCACACACGCAA
 A C T G A G T C G A C T C G T A A C T G A G T C C G T A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCTAGCACAA---
---VRRACAAWGG
 A C T G A G T C G A C T C G T A A C T G A G T C C G T A A G T C C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCTAGCACAA-
GTCAGCANNTN
 A C T G A G T C G A C T C G T A A C T G A G T C C G T A A G T C C G T A G T C A A C G T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T