Information for 13-CAAAAAAAGT (Motif 26)

G A T C G T C A C T G A C G T A G T C A C G T A C G T A G T C A A T C G G C A T
Reverse Opposite:
C G T A A T G C A C G T C G A T C G A T C A G T C G A T A G C T A C G T C T A G
p-value:1e-8
log p-value:-1.855e+01
Information Content per bp:1.830
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.35%
Number of Background Sequences with motif419.7
Percentage of Background Sequences with motif0.89%
Average Position of motif in Targets59.0 +/- 25.8bp
Average Position of motif in Background48.9 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CAAAAAAAGT--
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T G A T C G T C A C T G A C G T A G T C A C G T A C G T A G T C A A T C G G C A T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CAAAAAAAGT--
AACCCAATAAAATTCG
 A C G T A C G T A C G T A C G T G A T C G T C A C T G A C G T A G T C A C G T A C G T A G T C A A T C G G C A T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CAAAAAAAGT
TACTGGAAAAAAAA-
 A C G T A C G T A C G T A C G T A C G T G A T C G T C A C T G A C G T A G T C A C G T A C G T A G T C A A T C G G C A T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAAAAAAAGT
CCAATAAAAC-
 A C G T G A T C G T C A C T G A C G T A G T C A C G T A C G T A G T C A A T C G G C A T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CAAAAAAAGT---
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T G A T C G T C A C T G A C G T A G T C A C G T A C G T A G T C A A T C G G C A T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAAAAAAAGT
CCAATAAAAA-
 A C G T G A T C G T C A C T G A C G T A G T C A C G T A C G T A G T C A A T C G G C A T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CAAAAAAAGT-
ATGCTAAAAATAGAA
 A C G T A C G T A C G T A C G T G A T C G T C A C T G A C G T A G T C A C G T A C G T A G T C A A T C G G C A T A C G T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAAAAAAAGT
CCAATAAAAA-
 A C G T G A T C G T C A C T G A C G T A G T C A C G T A C G T A G T C A A T C G G C A T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:9
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CAAAAAAAGT--
GTTAAAAAAAAAAATTA
 A C G T A C G T A C G T A C G T A C G T G A T C G T C A C T G A C G T A G T C A C G T A C G T A G T C A A T C G G C A T A C G T A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAAAAAAAGT
NCYAATAAAA--
 A C G T A C G T G A T C G T C A C T G A C G T A G T C A C G T A C G T A G T C A A T C G G C A T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T