Information for 6-AGTATGAATT (Motif 16)

C G T A C T A G G A C T C G T A A C G T C T A G C G T A T G C A G A C T A G C T
Reverse Opposite:
C T G A C T G A A C G T C G A T G A T C C G T A C G A T C T G A A G T C A C G T
p-value:1e-9
log p-value:-2.231e+01
Information Content per bp:1.834
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif126.0
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets55.7 +/- 23.2bp
Average Position of motif in Background46.9 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGTATGAATT-
NNTNTCATGAATGT
 A C G T A C G T A C G T C G T A C T A G G A C T C G T A A C G T C T A G C G T A T G C A G A C T A G C T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGTATGAATT------
NNNNTGAATTCANNNC
 C G T A C T A G G A C T C G T A A C G T C T A G C G T A T G C A G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGTATGAATT-----
NTTNTATGAATGTGNNC
 A C G T A C G T C G T A C T A G G A C T C G T A A C G T C T A G C G T A T G C A G A C T A G C T A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Arid3b/MA0601.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGTATGAATT--
-ATATTAATTAA
 C G T A C T A G G A C T C G T A A C G T C T A G C G T A T G C A G A C T A G C T A C G T A C G T
A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGTATGAATT
-ATTTGAATT
 C G T A C T A G G A C T C G T A A C G T C T A G C G T A T G C A G A C T A G C T
A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AGTATGAATT--
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T C G T A C T A G G A C T C G T A A C G T C T A G C G T A T G C A G A C T A G C T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PH0172.1_Tlx2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGTATGAATT-----
AANTTATTAATTAATTA
 A C G T A C G T C G T A C T A G G A C T C G T A A C G T C T A G C G T A T G C A G A C T A G C T A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C T A G G A C T G C A T C G T A C G A T G A C T C G T A C G T A G C A T C G A T C T G A G C T A G A C T C G A T T G C A

PH0091.1_Lhx1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGTATGAATT-------
CGAATTAATTAATAATG
 C G T A C T A G G A C T C G T A A C G T C T A G C G T A T G C A G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C T C A G C G T A C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C A T G C T A G C T A G A C T A C T G

PB0068.1_Sox1_1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGTATGAATT----
NNNTATTGAATTGNNN
 A C G T A C G T C G T A C T A G G A C T C G T A A C G T C T A G C G T A T G C A G A C T A G C T A C G T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGTATGAATT
GAATATTCAT-
 A C G T C G T A C T A G G A C T C G T A A C G T C T A G C G T A T G C A G A C T A G C T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T