Information for 1-AGATTCAAATGCA (Motif 1)

T C G A A C T G C G T A C G A T A C G T G A T C G T C A C G T A C G T A G C A T A C T G G A T C G T C A
Reverse Opposite:
A C G T C A T G T A G C C G T A G C A T A C G T C A G T C T A G T G C A G C T A G C A T G T A C A G C T
p-value:1e-16
log p-value:-3.732e+01
Information Content per bp:1.640
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif25.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets63.1 +/- 18.6bp
Average Position of motif in Background45.5 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)3.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGATTCAAATGCA
CGGTTTCAAA----
 A C G T T C G A A C T G C G T A C G A T A C G T G A T C G T C A C G T A C G T A G C A T A C T G G A T C G T C A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGATTCAAATGCA
-NATTCAAAT---
 T C G A A C T G C G T A C G A T A C G T G A T C G T C A C G T A C G T A G C A T A C T G G A T C G T C A
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGATTCAAATGCA
ATATGCAAATNNN
 T C G A A C T G C G T A C G A T A C G T G A T C G T C A C G T A C G T A G C A T A C T G G A T C G T C A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGATTCAAATGCA---
-CTTTGTTATGCAAAT
 T C G A A C T G C G T A C G A T A C G T G A T C G T C A C G T A C G T A G C A T A C T G G A T C G T C A A C G T A C G T A C G T
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGATTCAAATGCA
ATATGCAAAT---
 T C G A A C T G C G T A C G A T A C G T G A T C G T C A C G T A C G T A G C A T A C T G G A T C G T C A
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGATTCAAATGCA---
-CATTGTTATGCAAAT
 T C G A A C T G C G T A C G A T A C G T G A T C G T C A C G T A C G T A G C A T A C T G G A T C G T C A A C G T A C G T A C G T
A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGATTCAAATGCA--
---TTCTNNAGAANT
 T C G A A C T G C G T A C G A T A C G T G A T C G T C A C G T A C G T A G C A T A C T G G A T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A C T A G C T C T G A C T G A C T A G C G T A C G T A T C G A G A C T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGATTCAAATGCA-
GGTTGCCATGGCAA
 T C G A A C T G C G T A C G A T A C G T G A T C G T C A C G T A C G T A G C A T A C T G G A T C G T C A A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGATTCAAATGCA
-WATGCAAATGAG
 T C G A A C T G C G T A C G A T A C G T G A T C G T C A C G T A C G T A G C A T A C T G G A T C G T C A
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGATTCAAATGCA
TTATGCAAAT---
 T C G A A C T G C G T A C G A T A C G T G A T C G T C A C G T A C G T A G C A T A C T G G A T C G T C A
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T