Information for 1-TGAKCAAYWAATR (Motif 5)

A C G T A C T G C G T A A C T G G T A C C G T A C G T A A G C T C G T A C G T A C G T A A C G T C T G A
Reverse Opposite:
A G C T C G T A A C G T A C G T C G A T C T G A A C G T A C G T A C T G T G A C A C G T A G T C C G T A
p-value:1e-13
log p-value:-3.070e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.7 +/- 25.9bp
Average Position of motif in Background37.3 +/- 3.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGAKCAAYWAATR---
ACAAGCAATTAATGAAT
 A C G T A C G T A C T G C G T A A C T G G T A C C G T A C G T A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGAKCAAYWAATR---
ACAAGCAATTAATGAAT
 A C G T A C G T A C T G C G T A A C T G G T A C C G T A C G T A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Hoxd8/MA0910.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGAKCAAYWAATR----
TAAATAATTAATGGCTA
 A C G T A C T G C G T A A C T G G T A C C G T A C G T A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C G T A C G T
C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A

PH0080.1_Hoxd8/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGAKCAAYWAATR----
TAAATAATTAATGGCTA
 A C G T A C T G C G T A A C T G G T A C C G T A C G T A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C G T A C G T
C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A

Hmx3/MA0898.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGAKCAAYWAATR---
ACAAGCAATTAAAGAAT
 A C G T A C G T A C T G C G T A A C T G G T A C C G T A C G T A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGAKCAAYWAATR---
ACAAGCAATTAAAGAAT
 A C G T A C G T A C T G C G T A A C T G G T A C C G T A C G T A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

Hmx2/MA0897.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGAKCAAYWAATR---
ACAAGCAATTAAAGAAT
 A C G T A C G T A C T G C G T A A C T G G T A C C G T A C G T A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGAKCAAYWAATR---
ACAAGCAATTAAAGAAT
 A C G T A C G T A C T G C G T A A C T G G T A C C G T A C G T A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0099.1_Lhx9/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGAKCAAYWAATR--
NGTNATTAATTAATGNG
 A C G T A C G T A C G T A C T G C G T A A C T G G T A C C G T A C G T A A G C T C G T A C G T A C G T A A C G T C T G A A C G T A C G T
T C A G T A C G A C G T C T A G G C T A G A C T G A C T T G C A C T G A G A C T A C G T C T G A C T G A G A C T C T A G T A C G C T A G

PB0074.1_Sox8_1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGAKCAAYWAATR-
TNNAGAACAATANATNN
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G G T A C C G T A C G T A A G C T C G T A C G T A C G T A A C G T C T G A A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C