Information for 10-CKCAGCCAKGGCT (Motif 20)

A T G C C A T G A G T C C T G A A C T G A G T C A G T C T G C A A C G T A C T G A C T G A G T C A G C T
Reverse Opposite:
C T G A A C T G A G T C A G T C G T C A A C G T A C T G A C T G A G T C A G C T A C T G G T A C A T C G
p-value:1e-7
log p-value:-1.710e+01
Information Content per bp:1.826
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif26.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets45.2 +/- 11.7bp
Average Position of motif in Background46.4 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CKCAGCCAKGGCT--
-GGGGCCGAGGCCTG
 A T G C C A T G A G T C C T G A A C T G A G T C A G T C T G C A A C G T A C T G A C T G A G T C A G C T A C G T A C G T
A C G T A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CKCAGCCAKGGCT---
--ATGCCCGGGCATGT
 A T G C C A T G A G T C C T G A A C T G A G T C A G T C T G C A A C G T A C T G A C T G A G T C A G C T A C G T A C G T A C G T
A C G T A C G T G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CKCAGCCAKGGCT
--CAGCC------
 A T G C C A T G A G T C C T G A A C T G A G T C A G T C T G C A A C G T A C T G A C T G A G T C A G C T
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CKCAGCCAKGGCT-
CACAGCGGGGGGTC
 A T G C C A T G A G T C C T G A A C T G A G T C A G T C T G C A A C G T A C T G A C T G A G T C A G C T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CKCAGCCAKGGCT-
TCCCAGMCRAGCCCC
 A C G T A T G C C A T G A G T C C T G A A C T G A G T C A G T C T G C A A C G T A C T G A C T G A G T C A G C T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CKCAGCCAKGGCT
CACAGN-------
 A T G C C A T G A G T C C T G A A C T G A G T C A G T C T G C A A C G T A C T G A C T G A G T C A G C T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CKCAGCCAKGGCT-
NCGCAGCGGGGGGTC
 A C G T A T G C C A T G A G T C C T G A A C T G A G T C A G T C T G C A A C G T A C T G A C T G A G T C A G C T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CKCAGCCAKGGCT
SCAGYCADGCATGAC-
 A C G T A C G T A C G T A T G C C A T G A G T C C T G A A C T G A G T C A G T C T G C A A C G T A C T G A C T G A G T C A G C T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CKCAGCCAKGGCT
-BCAGACWA----
 A T G C C A T G A G T C C T G A A C T G A G T C A G T C T G C A A C G T A C T G A C T G A G T C A G C T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CKCAGCCAKGGCT-
NGTTGCCATGGCAA
 A T G C C A T G A G T C C T G A A C T G A G T C A G T C T G C A A C G T A C T G A C T G A G T C A G C T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A