Information for 2-AGCAGCWGAAAAACAA (Motif 2)

C G T A A C T G A G T C C T G A C T A G T A G C G C T A A T C G C T G A T G C A C G T A T C G A C G T A G T A C C T G A G T C A
Reverse Opposite:
C A G T A G C T C A T G A C G T A C G T C G A T A C G T A G C T T A G C C G A T A T C G A G T C A G C T C T A G T G A C C G A T
p-value:1e-15
log p-value:-3.595e+01
Information Content per bp:1.728
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.2 +/- 27.2bp
Average Position of motif in Background49.3 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGCAGCWGAAAAACAA
ANCAGCTG--------
 C G T A A C T G A G T C C T G A C T A G T A G C G C T A A T C G C T G A T G C A C G T A T C G A C G T A G T A C C T G A G T C A
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGCAGCWGAAAAACAA-----
----GTTAAAAAAAAAAATTA
 C G T A A C T G A G T C C T G A C T A G T A G C G C T A A T C G C T G A T G C A C G T A T C G A C G T A G T A C C T G A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

PB0186.1_Tcf3_2/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGCAGCWGAAAAACAA--
---AGCCGAAAAAAAAAT
 C G T A A C T G A G T C C T G A C T A G T A G C G C T A A T C G C T G A T G C A C G T A T C G A C G T A G T A C C T G A G T C A A C G T A C G T
A C G T A C G T A C G T C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

PB0119.1_Foxa2_2/Jaspar

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AGCAGCWGAAAAACAA----
-----AAAAATAACAAACGG
 C G T A A C T G A G T C C T G A C T A G T A G C G C T A A T C G C T G A T G C A C G T A T C G A C G T A G T A C C T G A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGCAGCWGAAAAACAA
CGAAGCACACAAAATA
 C G T A A C T G A G T C C T G A C T A G T A G C G C T A A T C G C T G A T G C A C G T A T C G A C G T A G T A C C T G A G T C A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AGCAGCWGAAAAACAA
--TACTGGAAAAAAAA
 C G T A A C T G A G T C C T G A C T A G T A G C G C T A A T C G C T G A T G C A C G T A T C G A C G T A G T A C C T G A G T C A
A C G T A C G T G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A

Foxj2/MA0614.1/Jaspar

Match Rank:7
Score:0.52
Offset:8
Orientation:forward strand
Alignment:AGCAGCWGAAAAACAA
--------GTAAACAA
 C G T A A C T G A G T C C T G A C T A G T A G C G C T A A T C G C T G A T G C A C G T A T C G A C G T A G T A C C T G A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AGCAGCWGAAAAACAA----
---AACACCAAAACAAAGGA
 C G T A A C T G A G T C C T G A C T A G T A G C G C T A A T C G C T G A T G C A C G T A T C G A C G T A G T A C C T G A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

Foxd3/MA0041.1/Jaspar

Match Rank:9
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:AGCAGCWGAAAAACAA--
------AAACAAACATTC
 C G T A A C T G A G T C C T G A C T A G T A G C G C T A A T C G C T G A T G C A C G T A T C G A C G T A G T A C C T G A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

MF0005.1_Forkhead_class/Jaspar

Match Rank:10
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:AGCAGCWGAAAAACAA
------AAATAAACA-
 C G T A A C T G A G T C C T G A C T A G T A G C G C T A A T C G C T G A T G C A C G T A T C G A C G T A G T A C C T G A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T