Information for 2-ACATTTTTAAAGACTT (Motif 2)

C G T A A G T C G T C A A C G T A G C T A C G T A C G T G C A T C T G A C G T A C G T A A C T G G C T A T A G C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G C G A T T G A C G A C T G C A T A G C T C G T A G T C A C G T A C T G A G T C A C A G T C T A G G C A T
p-value:1e-14
log p-value:-3.226e+01
Information Content per bp:1.675
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif56.8
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets49.8 +/- 22.9bp
Average Position of motif in Background47.4 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:ACATTTTTAAAGACTT----
---NATTTAAGTACTTANNA
 C G T A A G T C G T C A A C G T A G C T A C G T A C G T G C A T C T G A C G T A C G T A A C T G G C T A T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:forward strand
Alignment:ACATTTTTAAAGACTT----
----CTTTAAGTACTTAATG
 C G T A A G T C G T C A A C G T A G C T A C G T A C G T G C A T C T G A C G T A C G T A A C T G G C T A T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

PH0047.1_Hoxa11/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ACATTTTTAAAGACTT--
--NNGTTTTACGACTTTA
 C G T A A G T C G T C A A C G T A G C T A C G T A C G T G C A T C T G A C G T A C G T A A C T G G C T A T A G C A C G T A C G T A C G T A C G T
A C G T A C G T G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ACATTTTTAAAGACTT--
--NNNTTTTACGACNTTN
 C G T A A G T C G T C A A C G T A G C T A C G T A C G T G C A T C T G A C G T A C G T A A C T G G C T A T A G C A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

PH0116.1_Nkx2-9/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:ACATTTTTAAAGACTT----
---NATTTAAGTACTTNAAA
 C G T A A G T C G T C A A C G T A G C T A C G T A C G T G C A T C T G A C G T A C G T A A C T G G C T A T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:ACATTTTTAAAGACTT--
ACATCTGGWWTYAATTAR
 C G T A A G T C G T C A A C G T A G C T A C G T A C G T G C A T C T G A C G T A C G T A A C T G G C T A T A G C A C G T A C G T A C G T A C G T
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A

PH0065.1_Hoxc10/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:ACATTTTTAAAGACTT--
--ANNTTTTACGACNTNN
 C G T A A G T C G T C A A C G T A G C T A C G T A C G T G C A T C T G A C G T A C G T A A C T G G C T A T A G C A C G T A C G T A C G T A C G T
A C G T A C G T T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

LIN54/MA0619.1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:ACATTTTTAAAGACTT
----ATTTGAATT---
 C G T A A G T C G T C A A C G T A G C T A C G T A C G T G C A T C T G A C G T A C G T A A C T G G C T A T A G C A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:ACATTTTTAAAGACTT
----NTTTTACGAC--
 C G T A A G T C G T C A A C G T A G C T A C G T A C G T G C A T C T G A C G T A C G T A A C T G G C T A T A G C A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ACATTTTTAAAGACTT--
-ANNATTTTACGACNTNA
 C G T A A G T C G T C A A C G T A G C T A C G T A C G T G C A T C T G A C G T A C G T A A C T G G C T A T A G C A C G T A C G T A C G T A C G T
A C G T G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A