Information for 3-GGGAATTAGTGGG (Motif 3)

A C T G A C T G A C T G C G T A C G T A A G C T A C G T G T C A T A C G C G A T A T C G C T A G A C T G
Reverse Opposite:
G T A C A G T C A T G C C G T A A G T C A C G T G T C A C T G A C G A T A C G T A G T C T A G C G T A C
p-value:1e-12
log p-value:-2.956e+01
Information Content per bp:1.796
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets35.0 +/- 21.3bp
Average Position of motif in Background45.4 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA5/MA0158.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGGAATTAGTGGG
---AATTAGTG--
 A C T G A C T G A C T G C G T A C G T A A G C T A C G T G T C A T A C G C G A T A T C G C T A G A C T G
A C G T A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T

PH0109.1_Nkx1-1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGGAATTAGTGGG-
TGCGCTAATTAGTGGGA
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A C G T A A G C T A C G T G T C A T A C G C G A T A T C G C T A G A C T G A C G T
C G A T T A C G G T A C T C A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T C A T G T A C G A C T G T C G A

PH0023.1_Dlx4/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GGGAATTAGTGGG-
GTCGGTAATTATNGNGN
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A C G T A A G C T A C G T G T C A T A C G C G A T A T C G C T A G A C T G A C G T
C A T G C G A T A T G C C A T G A C T G G A C T C G T A C G T A A C G T G C A T C T G A G A C T G T C A A C T G A G T C C A T G T G A C

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GGGAATTAGTGGG
---AATTATT---
 A C T G A C T G A C T G C G T A C G T A A G C T A C G T G T C A T A C G C G A T A T C G C T A G A C T G
A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T

PH0050.1_Hoxa3/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGGAATTAGTGGG
TTGAGGTAATTAGT---
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A C G T A A G C T A C G T G T C A T A C G C G A T A T C G C T A G A C T G
C A G T A G C T T A C G G T C A T C A G A T C G A G C T G T C A G T C A A C G T A C G T C T G A T C A G A G C T A C G T A C G T A C G T

PH0039.1_Mnx1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGGAATTAGTGGG-
GTACTAATTAGTGGCG
 A C G T A C G T A C T G A C T G A C T G C G T A C G T A A G C T A C G T G T C A T A C G C G A T A T C G C T A G A C T G A C G T
A C T G A C G T T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A A T C G A C G T C T A G T A C G G A T C T A C G

PH0027.1_Emx2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGGAATTAGTGGG-
ACCACTAATTAGTGGAC
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A C G T A A G C T A C G T G T C A T A C G C G A T A T C G C T A G A C T G A C G T
G C T A T A G C T G A C T C G A A G T C G A C T G T C A G C T A C A G T A C G T C T G A T C A G A G C T A C T G T A C G G C T A A G T C

PH0032.1_Evx2/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GGGAATTAGTGGG-
ANCGCTAATTAGCGGTN
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A C G T A A G C T A C G T G T C A T A C G C G A T A T C G C T A G A C T G A C G T
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G

PH0022.1_Dlx3/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GGGAATTAGTGGG-
NNNGGTAATTATNGNGN
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A C G T A A G C T A C G T G T C A T A C G C G A T A T C G C T A G A C T G A C G T
C A T G C G A T A T G C C A T G T C A G G A C T G C T A C G T A A C G T C G A T C T G A G A C T G T A C A C T G A G T C C A T G T G C A

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGGAATTAGTGGG
NCTGGAATGC-----
 A C G T A C G T A C T G A C T G A C T G C G T A C G T A A G C T A C G T G T C A T A C G C G A T A T C G C T A G A C T G
G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C A C G T A C G T A C G T A C G T A C G T