Information for 3-GWGCACAMTGCCAKKG (Motif 9)

A C T G C G A T A C T G A G T C C G T A A T G C G T C A T G C A A C G T A T C G A T G C A T G C C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C G T A C G T C A A C G T A T C G T A C G A T G C G T C A A C G T A C G T A T C G A C G T A C T G A G T C C G A T A G T C
p-value:1e-10
log p-value:-2.501e+01
Information Content per bp:1.864
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.2 +/- 25.5bp
Average Position of motif in Background41.1 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox1/MA0870.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GWGCACAMTGCCAKKG--
---AACAATAACATTGTT
 A C T G C G A T A C T G A G T C C G T A A T G C G T C A T G C A A C G T A T C G A T G C A T G C C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

SOX21/MA0866.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GWGCACAMTGCCAKKG--
---AACACTACCATTGTT
 A C T G C G A T A C T G A G T C C G T A A T G C G T C A T G C A A C G T A T C G A T G C A T G C C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T T C G A G T C A G A T C G C T A G T A C A G C T C T G A G T A C G T A C G T C A A G C T A G C T T A C G A G C T G A C T

PB0104.1_Zscan4_1/Jaspar

Match Rank:3
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GWGCACAMTGCCAKKG
NTNTATGTGCACATNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T A C T G A G T C C G T A A T G C G T C A T G C A A C G T A T C G A T G C A T G C C G T A A C G T A C T G A C T G
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GWGCACAMTGCCAKKG
TTGGCANNNTGCCAAG-
 A C G T A C T G C G A T A C T G A G T C C G T A A T G C G T C A T G C A A C G T A T C G A T G C A T G C C G T A A C G T A C T G A C T G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T

SOX4/MA0867.1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GWGCACAMTGCCAKKG---
---AACACTGCAATTGTTC
 A C T G C G A T A C T G A G T C C G T A A T G C G T C A T G C A A C G T A T C G A T G C A T G C C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C T G A A G T C G T C A G T A C A G C T A C T G G T A C G T C A G T C A G A C T A G C T A C T G A G C T A C G T G A T C

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------GWGCACAMTGCCAKKG
NNGTATGTGCACATNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T A C T G A G T C C G T A A T G C G T C A T G C A A C G T A T C G A T G C A T G C C G T A A C G T A C T G A C T G
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GWGCACAMTGCCAKKG
TGGCAGNCTGCCAG--
 A C T G C G A T A C T G A G T C C G T A A T G C G T C A T G C A A C G T A T C G A T G C A T G C C G T A A C G T A C T G A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

Sox11/MA0869.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GWGCACAMTGCCAKKG--
---AACACTGAAATTGTT
 A C T G C G A T A C T G A G T C C G T A A T G C G T C A T G C A A C G T A T C G A T G C A T G C C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GWGCACAMTGCCAKKG
----ACAAAG------
 A C T G C G A T A C T G A G T C C G T A A T G C G T C A T G C A A C G T A T C G A T G C A T G C C G T A A C G T A C T G A C T G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GWGCACAMTGCCAKKG
TGGCACCATGCCAA--
 A C T G C G A T A C T G A G T C C G T A A T G C G T C A T G C A A C G T A T C G A T G C A T G C C G T A A C G T A C T G A C T G
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T