Information for 6-CAGAHACATGAAA (Motif 8)

A G T C C G T A A C T G C T G A G A C T G T C A A T G C C G T A A C G T A C T G C G T A C G T A C G T A
Reverse Opposite:
A C G T C G A T A C G T A G T C C G T A A C G T A T C G A C G T C T G A A G C T A G T C C G A T A C T G
p-value:1e-10
log p-value:-2.501e+01
Information Content per bp:1.849
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.4 +/- 18.7bp
Average Position of motif in Background48.0 +/- 6.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CAGAHACATGAAA-
--GWAAYHTGABMC
 A G T C C G T A A C T G C T G A G A C T G T C A A T G C C G T A A C G T A C T G C G T A C G T A C G T A A C G T
A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CAGAHACATGAAA-
--GWAAYHTGAKMC
 A G T C C G T A A C T G C T G A G A C T G T C A A T G C C G T A A C G T A C T G C G T A C G T A C G T A A C G T
A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

TCF7L2/MA0523.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CAGAHACATGAAA----
---AAAGATCAAAGGAA
 A G T C C G T A A C T G C T G A G A C T G T C A A T G C C G T A A C G T A C T G C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGAHACATGAAA--
---AAAGATCAAAGG
 A G T C C G T A A C T G C T G A G A C T G T C A A T G C C G T A A C G T A C T G C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:5
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CAGAHACATGAAA----
-----ACATCAAAGGNA
 A G T C C G T A A C T G C T G A G A C T G T C A A T G C C G T A A C G T A C T G C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

PH0082.1_Irx2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAGAHACATGAAA----
TAAATACATGTAAAATT
 A G T C C G T A A C T G C T G A G A C T G T C A A T G C C G T A A C G T A C T G C G T A C G T A C G T A A C G T A C G T A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

PB0040.1_Lef1_1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAGAHACATGAAA------
--NANAGATCAAAGGGNNN
 A G T C C G T A A C T G C T G A G A C T G T C A A T G C C G T A A C G T A C T G C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PH0084.1_Irx3_2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGAHACATGAAA----
AATATACATGTAATATA
 A G T C C G T A A C T G C T G A G A C T G T C A A T G C C G T A A C G T A C T G C G T A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

LEF1/MA0768.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CAGAHACATGAAA-----
---AAAGATCAAAGGGTT
 A G T C C G T A A C T G C T G A G A C T G T C A A T G C C G T A A C G T A C T G C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PH0085.1_Irx4/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGAHACATGAAA----
AATATACATGTAAAACA
 A G T C C G T A A C T G C T G A G A C T G T C A A T G C C G T A A C G T A C T G C G T A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A