Information for 12-CAGTTGGGASTCT (Motif 20)

A T G C C G T A A T C G A C G T C A G T C T A G A C T G A T C G C T G A A T C G A G C T A T G C A C G T
Reverse Opposite:
T C G A A T C G C T G A A T G C A G C T T A G C A G T C A G T C G C T A G T C A A T G C C G A T A T C G
p-value:1e-8
log p-value:-1.856e+01
Information Content per bp:1.713
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif14.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.1 +/- 23.4bp
Average Position of motif in Background51.7 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAGTTGGGASTCT
-GGTTGGCAT---
 A T G C C G T A A T C G A C G T C A G T C T A G A C T G A T C G C T G A A T C G A G C T A T G C A C G T
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CAGTTGGGASTCT
CACGGCAGTTGGTNN---
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G A C G T C A G T C T A G A C T G A T C G C T G A A T C G A G C T A T G C A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAGTTGGGASTCT
-NNTTGGCANN--
 A T G C C G T A A T C G A C G T C A G T C T A G A C T G A T C G C T G A A T C G A G C T A T G C A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:4
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------CAGTTGGGASTCT
NNNTGGCAGTTGGTNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G A C G T C A G T C T A G A C T G A T C G C T G A A T C G A G C T A T G C A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G A C G T A C G T A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAGTTGGGASTCT
TGGCAGTTGG------
 A C G T A C G T A C G T A T G C C G T A A T C G A C G T C A G T C T A G A C T G A T C G C T G A A T C G A G C T A T G C A C G T
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAGTTGGGASTCT
AACAGATGGC-----
 A C G T A C G T A T G C C G T A A T C G A C G T C A G T C T A G A C T G A T C G C T G A A T C G A G C T A T G C A C G T
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAGTTGGGASTCT
---TTGGCA----
 A T G C C G T A A T C G A C G T C A G T C T A G A C T G A T C G C T G A A T C G A G C T A T G C A C G T
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAGTTGGGASTCT----
NTNNNAGGAGTCTCNTN
 A T G C C G T A A T C G A C G T C A G T C T A G A C T G A T C G C T G A A T C G A G C T A T G C A C G T A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CAGTTGGGASTCT
--NTTGGCANN--
 A T G C C G T A A T C G A C G T C A G T C T A G A C T G A T C G C T G A A T C G A G C T A T G C A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------CAGTTGGGASTCT
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G A C G T C A G T C T A G A C T G A T C G C T G A A T C G A G C T A T G C A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T