Information for 5-AATTAGGCAD (Motif 14)

G T C A C T G A C A G T G A C T C G T A T A C G T C A G A T G C C G T A C A G T
Reverse Opposite:
G T C A G C A T T A C G A G T C A T G C C G A T C T G A G T C A G A C T A C G T
p-value:1e-9
log p-value:-2.226e+01
Information Content per bp:1.537
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.54%
Number of Background Sequences with motif416.9
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets46.7 +/- 28.5bp
Average Position of motif in Background50.8 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AATTAGGCAD
TAATTAGN---
 A C G T G T C A C T G A C A G T G A C T C G T A T A C G T C A G A T G C C G T A C A G T
A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AATTAGGCAD
NTAATTAG----
 A C G T A C G T G T C A C T G A C A G T G A C T C G T A T A C G T C A G A T G C C G T A C A G T
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T A C G T A C G T

LHX2/MA0700.1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AATTAGGCAD
NNTAATTAGN---
 A C G T A C G T A C G T G T C A C T G A C A G T G A C T C G T A T A C G T C A G A T G C C G T A C A G T
T A C G G A C T G A C T T G C A C G T A A G C T C A G T C T G A T C A G A G C T A C G T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AATTAGGCAD
TTAATTAG----
 A C G T A C G T G T C A C T G A C A G T G A C T C G T A T A C G T C A G A T G C C G T A C A G T
C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AATTAGGCAD
NTAATTAG----
 A C G T A C G T G T C A C T G A C A G T G A C T C G T A T A C G T C A G A T G C C G T A C A G T
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T A C G T A C G T

EN1/MA0027.2/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AATTAGGCAD
CTAATTAG----
 A C G T A C G T G T C A C T G A C A G T G A C T C G T A T A C G T C A G A T G C C G T A C A G T
A T G C G A C T T G C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T

EMX2/MA0886.1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AATTAGGCAD
GCTAATTAGC---
 A C G T A C G T A C G T G T C A C T G A C A G T G A C T C G T A T A C G T C A G A T G C C G T A C A G T
T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C A C G T A C G T A C G T

PAX4/MA0068.2/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AATTAGGCAD
CTAATTAG----
 A C G T A C G T G T C A C T G A C A G T G A C T C G T A T A C G T C A G A T G C C G T A C A G T
A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T A C G T A C G T

NOTO/MA0710.1/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AATTAGGCAD
NNTAATTAGN---
 A C G T A C G T A C G T G T C A C T G A C A G T G A C T C G T A T A C G T C A G A T G C C G T A C A G T
T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C A C G T A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:10
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------AATTAGGCAD
ACTCCTAATTAGTCGT
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A C A G T G A C T C G T A T A C G T C A G A T G C C G T A C A G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T