Information for 3-TCACTAAAAT (Motif 12)

G A C T G T A C C G T A A T G C C G A T G C T A C T G A C G T A C G T A A C G T
Reverse Opposite:
C G T A C G A T A C G T A G C T C G A T C G T A T A C G C G A T C A T G C T G A
p-value:1e-9
log p-value:-2.288e+01
Information Content per bp:1.826
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.24%
Number of Background Sequences with motif156.6
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets48.8 +/- 23.5bp
Average Position of motif in Background45.4 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TCACTAAAAT---
CTACCAATAAAATTCT
 A C G T A C G T A C G T G A C T G T A C C G T A A T G C C G A T G C T A C T G A C G T A C G T A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TCACTAAAAT----
AATGCAATAAAATTTAT
 A C G T A C G T A C G T G A C T G T A C C G T A A T G C C G A T G C T A C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TCACTAAAAT---
AACCCAATAAAATTCG
 A C G T A C G T A C G T G A C T G T A C C G T A A T G C C G A T G C T A C T G A C G T A C G T A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PB0005.1_Bbx_1/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TCACTAAAAT-
NANTTCATTGAATTA
 A C G T A C G T A C G T A C G T G A C T G T A C C G T A A T G C C G A T G C T A C T G A C G T A C G T A A C G T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

HOXB13/MA0901.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCACTAAAAT
CCAATAAAAC
 G A C T G T A C C G T A A T G C C G A T G C T A C T G A C G T A C G T A A C G T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCACTAAAAT
CCAATAAAAA
 G A C T G T A C C G T A A T G C C G A T G C T A C T G A C G T A C G T A A C G T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

PB0079.1_Sry_1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TCACTAAAAT----
NANTATTATAATTNNN
 A C G T A C G T G A C T G T A C C G T A A T G C C G A T G C T A C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCACTAAAAT
NCYAATAAAA-
 A C G T G A C T G T A C C G T A A T G C C G A T G C T A C T G A C G T A C G T A A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCACTAAAAT
CCAATAAAAA
 G A C T G T A C C G T A A T G C C G A T G C T A C T G A C G T A C G T A A C G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0167.1_Tcf1/Jaspar

Match Rank:10
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------TCACTAAAAT
CCTTAGTTAACTAAAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G T A C C G T A A T G C C G A T G C T A C T G A C G T A C G T A A C G T
G A T C A T G C A C G T A G C T T C A G A T C G G A C T G C A T C G T A C G T A A T G C G A C T C T G A T G C A C G T A C T G A A C G T