Information for 13-TTTTGTCTGG (Motif 30)

A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T T A C G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A C G T A
p-value:1e-7
log p-value:-1.632e+01
Information Content per bp:1.944
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets40.7 +/- 22.9bp
Average Position of motif in Background50.3 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TTTTGTCTGG-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T T A C G A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TTTTGTCTGG
--CTGTCTGG
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T T A C G A C T G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TTTTGTCTGG
--TWGTCTGV
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T T A C G A C T G
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTTTGTCTGG--
ANTCCTTTGTCTNNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T T A C G A C T G A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TTTTGTCTGG
CCTTTGTTTT-
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T T A C G A C T G
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTTTGTCTGG
VBSYGTCTGG
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T T A C G A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTTTGTCTGG--
TTTTTTTTCNNGTN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T T A C G A C T G A C G T A C G T
G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

GATA3/MA0037.2/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTTGTCTGG
TCTTATCT--
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T T A C G A C T G
A G C T A G T C A C G T A C G T C G T A A C G T A G T C A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TTTTGTCTGG---
---GGTCTGGCAT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T T A C G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTTTGTCTGG
CCWTTGTY---
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T T A C G A C T G
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T