Information for 1-CASTCGTGAC (Motif 4)

A T G C G T C A A T C G A C G T T A G C C A T G A C G T A T C G C G T A T G A C
Reverse Opposite:
A C T G C G A T A T G C G T C A G T A C A T C G T G C A T A G C A C G T A T C G
p-value:1e-11
log p-value:-2.632e+01
Information Content per bp:1.699
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.52%
Number of Background Sequences with motif337.5
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets47.4 +/- 26.3bp
Average Position of motif in Background52.1 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX1/MA0779.1/Jaspar

Match Rank:1
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CASTCGTGAC-
NGCANTCATGCGTGACG
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T C A A T C G A C G T T A G C C A T G A C G T A T C G C G T A T G A C A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CASTCGTGAC-
---NCGTGACN
 A T G C G T C A A T C G A C G T T A G C C A T G A C G T A T C G C G T A T G A C A C G T
A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

PAX9/MA0781.1/Jaspar

Match Rank:3
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------CASTCGTGAC-
TGCAGTCATGCGTGACG
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T C A A T C G A C G T T A G C C A T G A C G T A T C G C G T A T G A C A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

Mitf/MA0620.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CASTCGTGAC-
-NCACGTGACN
 A T G C G T C A A T C G A C G T T A G C C A T G A C G T A T C G C G T A T G A C A C G T
A C G T A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C

POL002.1_INR/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CASTCGTGAC
TCAGTCTT---
 A C G T A T G C G T C A A T C G A C G T T A G C C A T G A C G T A T C G C G T A T G A C
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T

Arntl/MA0603.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CASTCGTGAC-
-NCACGTGACN
 A T G C G T C A A T C G A C G T T A G C C A T G A C G T A T C G C G T A T G A C A C G T
A C G T C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CASTCGTGAC
----CATGAC
 A T G C G T C A A T C G A C G T T A G C C A T G A C G T A T C G C G T A T G A C
A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CASTCGTGAC--
-----TTGACAG
 A T G C G T C A A T C G A C G T T A G C C A T G A C G T A T C G C G T A T G A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CASTCGTGAC---
-----TTGACAGG
 A T G C G T C A A T C G A C G T T A G C C A T G A C G T A T C G C G T A T G A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CASTCGTGAC
SCAGYCADGCATGAC
 A C G T A C G T A C G T A C G T A C G T A T G C G T C A A T C G A C G T T A G C C A T G A C G T A T C G C G T A T G A C
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C