Information for 7-GGAGCCCCGACAGCCM (Motif 20)

A C T G T A C G C T G A C T A G A G T C G A T C A G T C G T A C C A T G T C G A T G A C G T C A T A C G T A G C A T G C G T C A
Reverse Opposite:
C A G T A T C G A C T G A G T C A C G T A C T G A G C T G T A C C A T G A C T G C T A G A C T G A G T C A G C T A T G C T G A C
p-value:1e-6
log p-value:-1.607e+01
Information Content per bp:1.681
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif44.4
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets49.2 +/- 26.3bp
Average Position of motif in Background43.1 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGAGCCCCGACAGCCM-
TACGCCCCGCCACTCTG
 A C T G T A C G C T G A C T A G A G T C G A T C A G T C G T A C C A T G T C G A T G A C G T C A T A C G T A G C A T G C G T C A A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCCCCGACAGCCM
CGGAGC-----------
 A C G T A C T G T A C G C T G A C T A G A G T C G A T C A G T C G T A C C A T G T C G A T G A C G T C A T A C G T A G C A T G C G T C A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GGAGCCCCGACAGCCM
-CAGCC----------
 A C T G T A C G C T G A C T A G A G T C G A T C A G T C G T A C C A T G T C G A T G A C G T C A T A C G T A G C A T G C G T C A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0025.1_Glis2_1/Jaspar

Match Rank:4
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GGAGCCCCGACAGCCM
TATCGACCCCCCACAG---
 A C G T A C G T A C G T A C T G T A C G C T G A C T A G A G T C G A T C A G T C G T A C C A T G T C G A T G A C G T C A T A C G T A G C A T G C G T C A
G A C T G C T A G C A T T A G C A C T G T G C A A G T C A G T C G A T C G A T C G A T C G A T C T G C A A G T C C T G A C A T G A C G T A C G T A C G T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGAGCCCCGACAGCCM
TGAACCCGATGACCC-
 A C T G T A C G C T G A C T A G A G T C G A T C A G T C G T A C C A T G T C G A T G A C G T C A T A C G T A G C A T G C G T C A
A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----GGAGCCCCGACAGCCM
NNNNTGAGCACTGTNNG---
 A C G T A C G T A C G T A C G T A C T G T A C G C T G A C T A G A G T C G A T C A G T C G T A C C A T G T C G A T G A C G T C A T A C G T A G C A T G C G T C A
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:GGAGCCCCGACAGCCM-
---------BCAGACWA
 A C T G T A C G C T G A C T A G A G T C G A T C A G T C G T A C C A T G T C G A T G A C G T C A T A C G T A G C A T G C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GGAGCCCCGACAGCCM
--GGCCCCGCCCCC--
 A C T G T A C G C T G A C T A G A G T C G A T C A G T C G T A C C A T G T C G A T G A C G T C A T A C G T A G C A T G C G T C A
A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:9
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----GGAGCCCCGACAGCCM
TTGGGGGCGCCCCTAG-----
 A C G T A C G T A C G T A C G T A C G T A C T G T A C G C T G A C T A G A G T C G A T C A G T C G T A C C A T G T C G A T G A C G T C A T A C G T A G C A T G C G T C A
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GGAGCCCCGACAGCCM
--TGCCCAGNHW----
 A C T G T A C G C T G A C T A G A G T C G A T C A G T C G T A C C A T G T C G A T G A C G T C A T A C G T A G C A T G C G T C A
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T