Information for 4-GTGCATCCAGCATAGC (Motif 14)

C T A G C G A T A T C G G T A C G T C A C A G T A G T C A G T C C G T A A C T G A T G C G C T A A C G T T C G A A C T G A G T C
Reverse Opposite:
T C A G A G T C A G C T T G C A C G A T A T C G A G T C C G A T C T A G C T A G G C T A A C G T A C T G A T G C G C T A A G T C
p-value:1e-9
log p-value:-2.274e+01
Information Content per bp:1.736
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.3 +/- 19.5bp
Average Position of motif in Background30.8 +/- 10.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GTGCATCCAGCATAGC
-GYCATCMATCAT---
 C T A G C G A T A T C G G T A C G T C A C A G T A G T C A G T C C G T A A C T G A T G C G C T A A C G T T C G A A C T G A G T C
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GTGCATCCAGCATAGC
--TGAGTCAGCA----
 C T A G C G A T A T C G G T A C G T C A C A G T A G T C A G T C C G T A A C T G A T G C G C T A A C G T T C G A A C T G A G T C
A C G T A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GTGCATCCAGCATAGC
-GGCCYCCTGCTGDGH
 C T A G C G A T A T C G G T A C G T C A C A G T A G T C A G T C C G T A A C T G A T G C G C T A A C G T T C G A A C T G A G T C
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0024.1_Gcm1_1/Jaspar

Match Rank:4
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GTGCATCCAGCATAGC-
-TCGTACCCGCATCATT
 C T A G C G A T A T C G G T A C G T C A C A G T A G T C A G T C C G T A A C T G A T G C G C T A A C G T T C G A A C T G A G T C A C G T
A C G T G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:GTGCATCCAGCATAGC
----DCTCAGCAGG--
 C T A G C G A T A T C G G T A C G T C A C A G T A G T C A G T C C G T A A C T G A T G C G C T A A C G T T C G A A C T G A G T C
A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GTGCATCCAGCATAGC
ATGCATWATGCATRW-
 C T A G C G A T A T C G G T A C G T C A C A G T A G T C A G T C C G T A A C T G A T G C G C T A A C G T T C G A A C T G A G T C
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--GTGCATCCAGCATAGC
TGGACCAATCAGCACTCT
 A C G T A C G T C T A G C G A T A T C G G T A C G T C A C A G T A G T C A G T C C G T A A C T G A T G C G C T A A C G T T C G A A C T G A G T C
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.48
Offset:2
Orientation:forward strand
Alignment:GTGCATCCAGCATAGC-
--CCACACAGCAGGAGA
 C T A G C G A T A T C G G T A C G T C A C A G T A G T C A G T C C G T A A C T G A T G C G C T A A C G T T C G A A C T G A G T C A C G T
A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.48
Offset:7
Orientation:forward strand
Alignment:GTGCATCCAGCATAGC
-------CAGCC----
 C T A G C G A T A T C G G T A C G T C A C A G T A G T C A G T C C G T A A C T G A T G C G C T A A C G T T C G A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.47
Offset:5
Orientation:reverse strand
Alignment:GTGCATCCAGCATAGC
-----GTCAGCANNTN
 C T A G C G A T A T C G G T A C G T C A C A G T A G T C A G T C C G T A A C T G A T G C G C T A A C G T T C G A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T