Information for 2-AATRTGTGAT (Motif 9)

C T G A G T C A A C G T C T G A A C G T A T C G A C G T A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C C G T A A T G C C G T A G A C T C G T A A C G T A G C T
p-value:1e-11
log p-value:-2.704e+01
Information Content per bp:1.838
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.51%
Number of Background Sequences with motif69.2
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets50.5 +/- 28.3bp
Average Position of motif in Background43.7 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBX21/MA0690.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AATRTGTGAT
AAGGTGTGAA
 C T G A G T C A A C G T C T G A A C G T A T C G A C G T A C T G C G T A A C G T
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A

TBX1/MA0805.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AATRTGTGAT
-AGGTGTGA-
 C T G A G T C A A C G T C T G A A C G T A T C G A C G T A C T G C G T A A C G T
A C G T C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T

EOMES/MA0800.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AATRTGTGAT---
AAGGTGTGAAAAT
 C T G A G T C A A C G T C T G A A C G T A T C G A C G T A C T G C G T A A C G T A C G T A C G T A C G T
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

MGA/MA0801.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AATRTGTGAT
-AGGTGTGA-
 C T G A G T C A A C G T C T G A A C G T A T C G A C G T A C T G C G T A A C G T
A C G T C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AATRTGTGAT---
-NNHTGTGGTTWN
 C T G A G T C A A C G T C T G A A C G T A T C G A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

TBX15/MA0803.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AATRTGTGAT
-AGGTGTGA-
 C T G A G T C A A C G T C T G A A C G T A T C G A C G T A C T G C G T A A C G T
A C G T C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AATRTGTGAT-
-AGGTGTGAAM
 C T G A G T C A A C G T C T G A A C G T A T C G A C G T A C T G C G T A A C G T A C G T
A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A

TBX20/MA0689.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AATRTGTGAT-
TAGGTGTGAAG
 C T G A G T C A A C G T C T G A A C G T A T C G A C G T A C T G C G T A A C G T A C G T
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

Gfi1/MA0038.1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AATRTGTGAT---
---CNGTGATTTN
 C T G A G T C A A C G T C T G A A C G T A T C G A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AATRTGTGAT
AAGGTGTKAA
 C T G A G T C A A C G T C T G A A C G T A T C G A C G T A C T G C G T A A C G T
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A