Information for 3-STTSAAATWTYCT (Motif 6)

A T G C C G A T A C G T A T G C C G T A C T G A C G T A A C G T C G T A A C G T A G C T A G T C A C G T
Reverse Opposite:
C G T A A C T G T C G A C G T A G C A T C G T A A C G T A G C T A C G T A T C G C G T A C G T A A T C G
p-value:1e-13
log p-value:-3.118e+01
Information Content per bp:1.868
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.9 +/- 32.5bp
Average Position of motif in Background45.8 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-STTSAAATWTYCT
NATTCAAAT-----
 A C G T A T G C C G A T A C G T A T G C C G T A C T G A C G T A A C G T C G T A A C G T A G C T A G T C A C G T
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:STTSAAATWTYCT-
---AAGATATCCTT
 A T G C C G A T A C G T A T G C C G T A C T G A C G T A A C G T C G T A A C G T A G C T A G T C A C G T A C G T
A C G T A C G T A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---STTSAAATWTYCT
CGGTTTCAAA------
 A C G T A C G T A C G T A T G C C G A T A C G T A T G C C G T A C T G A C G T A A C G T C G T A A C G T A G C T A G T C A C G T
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.60
Offset:6
Orientation:forward strand
Alignment:STTSAAATWTYCT---
------ATTTCCTGTN
 A T G C C G A T A C G T A T G C C G T A C T G A C G T A A C G T C G T A A C G T A G C T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G

Arid5a/MA0602.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-STTSAAATWTYCT
NNTNNCAATATTAG
 A C G T A T G C C G A T A C G T A T G C C G T A C T G A C G T A A C G T C G T A A C G T A G C T A G T C A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-STTSAAATWTYCT
NNTNNCAATATTAG
 A C G T A T G C C G A T A C G T A T G C C G T A C T G A C G T A A C G T C G T A A C G T A G C T A G T C A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0146.1_Mafk_2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-STTSAAATWTYCT-
CCTTGCAATTTTTNN
 A C G T A T G C C G A T A C G T A T G C C G T A C T G A C G T A A C G T C G T A A C G T A G C T A G T C A C G T A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:STTSAAATWTYCT---
------ATTTCCTGTN
 A T G C C G A T A C G T A T G C C G T A C T G A C G T A A C G T C G T A A C G T A G C T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A G C T A C G T A C G T A G T C A G T C A C G T A C T G G A C T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------STTSAAATWTYCT
ATAACCACTTGAAAATT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G A T A C G T A T G C C G T A C T G A C G T A A C G T C G T A A C G T A G C T A G T C A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-STTSAAATWTYCT
ACATCAAAGG----
 A C G T A T G C C G A T A C G T A T G C C G T A C T G A C G T A A C G T C G T A A C G T A G C T A G T C A C G T
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T