Information for 10-AAAGAAATCCCGT (Motif 20)

C G T A C G T A C G T A C T A G C G T A C G T A C T G A C G A T A G T C G T A C A G T C A C T G A C G T
Reverse Opposite:
C G T A G T A C A C T G A C T G A C T G C G T A A G C T A C G T A C G T A G T C A C G T A C G T A C G T
p-value:1e-9
log p-value:-2.187e+01
Information Content per bp:1.929
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets30.8 +/- 18.6bp
Average Position of motif in Background58.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0129.1_Otx1/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AAAGAAATCCCGT--
NNNAATTAATCCCCNCN
 A C G T A C G T C G T A C G T A C G T A C T A G C G T A C G T A C T G A C G A T A G T C G T A C A G T C A C T G A C G T A C G T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

PH0124.1_Obox5_1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AAAGAAATCCCGT--
NANANTTAATCCCNNNN
 A C G T A C G T C G T A C G T A C G T A C T A G C G T A C G T A C T G A C G A T A G T C G T A C A G T C A C T G A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------AAAGAAATCCCGT
TACTGGAAAAAAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A C T A G C G T A C G T A C T G A C G A T A G T C G T A C A G T C A C T G A C G T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AAAGAAATCCCGT--
GNNNATTAATCCCTNCN
 A C G T A C G T C G T A C G T A C G T A C T A G C G T A C G T A C T G A C G A T A G T C G T A C A G T C A C T G A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAAGAAATCCCGT
--GGAAANCCCC-
 C G T A C G T A C G T A C T A G C G T A C G T A C T G A C G A T A G T C G T A C A G T C A C T G A C G T
A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AAAGAAATCCCGT
----TAATCCCN-
 C G T A C G T A C G T A C T A G C G T A C G T A C T G A C G A T A G T C G T A C A G T C A C T G A C G T
A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAAGAAATCCCGT
--GGAAATTCCC-
 C G T A C G T A C G T A C T A G C G T A C G T A C T G A C G A T A G T C G T A C A G T C A C T G A C G T
A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AAAGAAATCCCGT--
GANNATTAATCCCTNNN
 A C G T A C G T C G T A C G T A C G T A C T A G C G T A C G T A C T G A C G A T A G T C G T A C A G T C A C T G A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AAAGAAATCCCGT----
--AGAAATGACTTCCCT
 C G T A C G T A C G T A C T A G C G T A C G T A C T G A C G A T A G T C G T A C A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

PB0182.1_Srf_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AAAGAAATCCCGT
GTTAAAAAAAAAAATTA
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A C T A G C G T A C G T A C T G A C G A T A G T C G T A C A G T C A C T G A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T