Information for 4-GAGSCTTCCA (Motif 15)

T A C G C G T A C T A G A T C G G T A C G A C T A C G T A T G C T G A C G C T A
Reverse Opposite:
C G A T A C T G T A C G T G C A C T G A C A T G T A G C G A T C G C A T A T G C
p-value:1e-10
log p-value:-2.450e+01
Information Content per bp:1.490
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.63%
Number of Background Sequences with motif88.7
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets40.3 +/- 21.2bp
Average Position of motif in Background48.1 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAGSCTTCCA---
-TGTCTGDCACCT
 T A C G C G T A C T A G A T C G G T A C G A C T A C G T A T G C T G A C G C T A A C G T A C G T A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAGSCTTCCA---
CTGTCTGTCACCT
 T A C G C G T A C T A G A T C G G T A C G A C T A C G T A T G C T G A C G C T A A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAGSCTTCCA---
-GGGATTGCATNN
 T A C G C G T A C T A G A T C G G T A C G A C T A C G T A T G C T G A C G C T A A C G T A C G T A C G T
A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGSCTTCCA-
---GCTGTCAA
 T A C G C G T A C T A G A T C G G T A C G A C T A C G T A T G C T G A C G C T A A C G T
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAGSCTTCCA--
--VGCTGWCAVB
 T A C G C G T A C T A G A T C G G T A C G A C T A C G T A T G C T G A C G C T A A C G T A C G T
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGSCTTCCA----
AAGCACCTGTCAATAT
 A C G T A C G T T A C G C G T A C T A G A T C G G T A C G A C T A C G T A T G C T G A C G C T A A C G T A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAGSCTTCCA-
---CTTGGCAA
 T A C G C G T A C T A G A T C G G T A C G A C T A C G T A T G C T G A C G C T A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAGSCTTCCA
---GCTTCC-
 T A C G C G T A C T A G A T C G G T A C G A C T A C G T A T G C T G A C G C T A
A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAGSCTTCCA----
--GSCTGTCACTCA
 T A C G C G T A C T A G A T C G G T A C G A C T A C G T A T G C T G A C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAGSCTTCCA--
--GCATTCCAGN
 T A C G C G T A C T A G A T C G G T A C G A C T A C G T A T G C T G A C G C T A A C G T A C G T
A C G T A C G T C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G