Information for 4-AGACACATGWAAA (Motif 8)

C G T A A T C G C G T A T A G C C G T A G T A C C G T A A C G T A T C G G C A T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A A T G C C G T A A C G T A C T G A C G T A T C G A C G T A T G C G A C T
p-value:1e-10
log p-value:-2.519e+01
Information Content per bp:1.831
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.2 +/- 18.6bp
Average Position of motif in Background49.1 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU2F2/MA0507.1/Jaspar

Match Rank:1
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:AGACACATGWAAA----
----ATATGCAAATNNN
 C G T A A T C G C G T A T A G C C G T A G T A C C G T A A C G T A T C G G C A T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.67
Offset:4
Orientation:forward strand
Alignment:AGACACATGWAAA-
----ATATGCAAAT
 C G T A A T C G C G T A T A G C C G T A G T A C C G T A A C G T A T C G G C A T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

PH0085.1_Irx4/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGACACATGWAAA---
AATATACATGTAAAACA
 A C G T C G T A A T C G C G T A T A G C C G T A G T A C C G T A A C G T A T C G G C A T C G T A C G T A C G T A A C G T A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

PH0082.1_Irx2/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGACACATGWAAA---
TAAATACATGTAAAATT
 A C G T C G T A A T C G C G T A T A G C C G T A G T A C C G T A A C G T A T C G G C A T C G T A C G T A C G T A A C G T A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AGACACATGWAAA-
----TTATGCAAAT
 C G T A A T C G C G T A T A G C C G T A G T A C C G T A A C G T A T C G G C A T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

PH0086.1_Irx5/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGACACATGWAAA---
AATATACATGTAAAATT
 A C G T C G T A A T C G C G T A T A G C C G T A G T A C C G T A A C G T A T C G G C A T C G T A C G T A C G T A A C G T A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

PH0083.1_Irx3_1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGACACATGWAAA---
AAAATACATGTAATACT
 A C G T C G T A A T C G C G T A T A G C C G T A G T A C C G T A A C G T A T C G G C A T C G T A C G T A C G T A A C G T A C G T A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.65
Offset:5
Orientation:forward strand
Alignment:AGACACATGWAAA----
-----TATGCWAATBAV
 C G T A A T C G C G T A T A G C C G T A G T A C C G T A A C G T A T C G G C A T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PH0084.1_Irx3_2/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGACACATGWAAA---
AATATACATGTAATATA
 A C G T C G T A A T C G C G T A T A G C C G T A G T A C C G T A A C G T A T C G G C A T C G T A C G T A C G T A A C G T A C G T A C G T
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

PH0087.1_Irx6/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGACACATGWAAA---
AAAATACATGTAAAAAT
 A C G T C G T A A T C G C G T A T A G C C G T A G T A C C G T A A C G T A T C G G C A T C G T A C G T A C G T A A C G T A C G T A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T