Information for 2-TGCCCCTGTGTCA (Motif 3)

A G C T A C T G A T G C A G T C G T A C A G T C A C G T A T C G A G C T A C T G G A C T A T G C C G T A
Reverse Opposite:
A C G T A T C G C G T A A G T C C T G A A T G C G T C A A C T G A C T G C T A G A T C G A G T C C T G A
p-value:1e-12
log p-value:-2.777e+01
Information Content per bp:1.820
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets44.6 +/- 20.3bp
Average Position of motif in Background48.4 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCCTGTGTCA
TTGGCATGGTGCCA
 A C G T A G C T A C T G A T G C A G T C G T A C A G T C A C G T A T C G A G C T A C T G G A C T A T G C C G T A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGCCCCTGTGTCA-
CTTGGCANNNTGCCAA
 A C G T A C G T A G C T A C T G A T G C A G T C G T A C A G T C A C G T A T C G A G C T A C T G G A C T A T G C C G T A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TGCCCCTGTGTCA
----GCTGTG---
 A G C T A C T G A T G C A G T C G T A C A G T C A C G T A T C G A G C T A C T G G A C T A T G C C G T A
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGCCCCTGTGTCA---
TGACCCAGTGACCTAC
 A G C T A C T G A T G C A G T C G T A C A G T C A C G T A T C G A G C T A C T G G A C T A T G C C G T A A C G T A C G T A C G T
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCCCCTGTGTCA
TGCCCTGAGGGCA
 A G C T A C T G A T G C A G T C G T A C A G T C A C G T A T C G A G C T A C T G G A C T A T G C C G T A
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCCCCTGTGTCA
TGCCCTGAGGGCA
 A G C T A C T G A T G C A G T C G T A C A G T C A C G T A T C G A G C T A C T G G A C T A T G C C G T A
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCCCCTGTGTCA
TGCCCTGAGGGCA
 A G C T A C T G A T G C A G T C G T A C A G T C A C G T A T C G A G C T A C T G G A C T A T G C C G T A
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

PB0050.1_Osr1_1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGCCCCTGTGTCA
TNNTGCTACTGTNNNN
 A C G T A C G T A C G T A G C T A C T G A T G C A G T C G T A C A G T C A C G T A T C G A G C T A C T G G A C T A T G C C G T A
G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TGCCCCTGTGTCA
NNNNTGACCCGGCGCG-
 A C G T A C G T A C G T A C G T A G C T A C T G A T G C A G T C G T A C A G T C A C G T A T C G A G C T A C T G G A C T A T G C C G T A
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TGCCCCTGTGTCA
CNNNGCTACTGTANNN
 A C G T A C G T A C G T A G C T A C T G A T G C A G T C G T A C A G T C A C G T A T C G A G C T A C T G G A C T A T G C C G T A
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T