Information for 3-CGGACCTTAG (Motif 15)

A G T C C T A G A C T G C T G A G T A C A G T C A C G T A C G T C G T A T A C G
Reverse Opposite:
A T G C A C G T T C G A C G T A A C T G A C T G A G C T A G T C A G T C A C T G
p-value:1e-9
log p-value:-2.093e+01
Information Content per bp:1.864
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif25.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets49.4 +/- 19.0bp
Average Position of motif in Background41.0 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGGACCTTAG
CTGACCTTTG
 A G T C C T A G A C T G C T G A G T A C A G T C A C G T A C G T C G T A T A C G
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

HINFP/MA0131.2/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CGGACCTTAG
NCGCGGACGTTG-
 A C G T A C G T A C G T A G T C C T A G A C T G C T G A G T A C A G T C A C G T A C G T C G T A T A C G
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGGACCTTAG
-TGACCTYA-
 A G T C C T A G A C T G C T G A G T A C A G T C A C G T A C G T C G T A T A C G
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGGACCTTAG
NTGACCTTGA
 A G T C C T A G A C T G C T G A G T A C A G T C A C G T A C G T C G T A T A C G
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGGACCTTAG
-TGACCT---
 A G T C C T A G A C T G C T G A G T A C A G T C A C G T A C G T C G T A T A C G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGGACCTTAG
GTGACCTT--
 A G T C C T A G A C T G C T G A G T A C A G T C A C G T A C G T C G T A T A C G
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGGACCTTAG
CGGAGC----
 A G T C C T A G A C T G C T G A G T A C A G T C A C G T A C G T C G T A T A C G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGGACCTTAG-
-TGACCTTGAN
 A G T C C T A G A C T G C T G A G T A C A G T C A C G T A C G T C G T A T A C G A C G T
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGGACCTTAG-
-TGACCTTGAV
 A G T C C T A G A C T G C T G A G T A C A G T C A C G T A C G T C G T A T A C G A C G T
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CGGACCTTAG--
NNATTGGACTTTNGNN
 A C G T A C G T A C G T A C G T A G T C C T A G A C T G C T G A G T A C A G T C A C G T A C G T C G T A T A C G A C G T A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C