Information for 2-ACGTTTGCGA (Motif 8)

G T C A A T G C A C T G A C G T A C G T A C G T A C T G G A T C T A C G C G T A
Reverse Opposite:
A C G T A G T C C T A G A G T C C G T A C G T A C G T A A G T C A T C G A C G T
p-value:1e-10
log p-value:-2.334e+01
Information Content per bp:1.871
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets32.3 +/- 21.7bp
Average Position of motif in Background52.4 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0044.1_Mtf1_1/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ACGTTTGCGA---
GGGCCGTGTGCAAAAA
 A C G T A C G T A C G T G T C A A T G C A C T G A C G T A C G T A C G T A C T G G A T C T A C G C G T A A C G T A C G T A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

Hoxa11/MA0911.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ACGTTTGCGA--
ANTTTTACGACC
 G T C A A T G C A C T G A C G T A C G T A C G T A C T G G A T C T A C G C G T A A C G T A C G T
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

MTF1/MA0863.1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ACGTTTGCGA-
GTGCCGTGTGCAAA
 A C G T A C G T A C G T G T C A A T G C A C T G A C G T A C G T A C G T A C T G G A T C T A C G C G T A A C G T
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

FOXD2/MA0847.1/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ACGTTTGCGA
-TGTTTAC--
 G T C A A T G C A C T G A C G T A C G T A C G T A C T G G A T C T A C G C G T A
A C G T G A C T T C A G C G A T C A G T C A G T C T G A A G T C A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ACGTTTGCGA
VBSYGTCTGG--
 A C G T A C G T G T C A A T G C A C T G A C G T A C G T A C G T A C T G G A T C T A C G C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

PB0045.1_Myb_1/Jaspar

Match Rank:6
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------ACGTTTGCGA-
NNNNTAACGGTTNNNAN
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C A C T G A C G T A C G T A C G T A C T G G A T C T A C G C G T A A C G T
G C T A C T G A C G T A C G T A G A C T C T G A C G T A A G T C A T C G C A T G G A C T G A C T C A G T G T A C G T A C G C T A C G A T

PH0067.1_Hoxc12/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ACGTTTGCGA-----
GNNNTTTTACGACCTNA
 A C G T A C G T G T C A A T G C A C T G A C G T A C G T A C G T A C T G G A T C T A C G C G T A A C G T A C G T A C G T A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

PH0077.1_Hoxd12/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ACGTTTGCGA-----
NNNATTTTACGACNNTN
 A C G T A C G T G T C A A T G C A C T G A C G T A C G T A C G T A C T G G A T C T A C G C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ACGTTTGCGA-----
ANATTTTACGAGNNNN
 A C G T G T C A A T G C A C T G A C G T A C G T A C G T A C T G G A T C T A C G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXC11/MA0651.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ACGTTTGCGA--
-NTTTTACGACC
 G T C A A T G C A C T G A C G T A C G T A C G T A C T G G A T C T A C G C G T A A C G T A C G T
A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C